Gene Information

Name : D650_4460 (D650_4460)
Accession : YP_007665224.1
Strain : Mannheimia haemolytica USDA-ARS-USMARC-183
Genome accession: NC_020833
Putative virulence/resistance : Unknown
Product : Integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 440527 - 441753 bp
Length : 1227 bp
Strand : -
Note : integrase PRK09692; Integrase of Pasteurellaceae UniRef RepID=Q0I4P6_HAES1

DNA sequence :
ATGGCTAGAAAAATCACACCGTTAAACGATACCCAAATAAGAAAAGCGAAACCGGAAGACAGCCCATTAAGAGACGGTAA
CGGCTTACTACTTGTTATTACCTCAAATTCTAAATTGTGGCGGTTTAGGTATGAAAGACCGTTCACAAAAAAGCGGAATG
ATTTAAGCATTGGGGCTTACCCTGATATTTCTTTAGCACAAGCGAGAGAAATTAGAGAAGAATATAGGGCATTATTGGCT
CAAAATATCGACCCTCAAACCCACCGCCAACAACAGGAACAGGCAAAGGCCAACGAAATCAGCAACACTTATGAAAATGT
AGCGTGGGCGTGGCTGGAACACCGCAAGACCAAGAAGAATTTTTCAGACAACTACCAAAAAGATGTAATCGCCTTAATTA
AAAATAACCTCTTGCCGCACTTTGGAAGAATGCCTATCACACAAATAACCGCACCAATGGCAATCAAGGCATTCAAGCAA
TACCAAGACGAGGGCAAACTAGAGAAGTTAAAACGGGCAATTCAAAAACATAATGAAATTATGATGTTTGCCGTACACCG
TGAAATGATACCGTTTAACCCTACCGCCAATATTGCGAAAGAGTTTGATAGCCCAACGGTTGAACATTTCAAAACCATTA
AGCCGGAAGATTTAGGCGAGTTTTTATACACCTTACAAAACGCCCAAATTCATTTACAGACACGCTATTTAATTCTGTGG
CAGTTACTCACAATGACCCGCCCGAATGAAGCGGCTAAGGCAAAATGGGCGGATATAGACGAAAAAGCCAAACTGTGGAC
GATACCGGCGGAAAATATGAAGCGAGGCATTGAGCATAAAATCACACTCTCACGCCAAGCAATCGCACTTTTGCGAGAGA
TTAAAAAGCTAAGTGGCGGTAAAACGTATTTATTCCCTAGCGTGAAGAACCCACAAACGCACGTCAATACTCAAACCGCC
AACGGTGCGATCAAACGAATGGGCTACAAGGGCAAATTAGTGGCTCACGGCTTGCGGGCCATCGCCTCCACTTATCTTAA
TGAGAAAGGCTACAATAGCGATTTAATCGAGGTTGCCTTATCGCATTTAAACAGCGACCGAATCAAAGCCGCCTATGATA
GAGGCGAACGCCTAGAGCAACGTTTTAAACTGCTCCAAGTGTGGGCGGATTTTGTAGAGGAATGTTCGCAAGGTAGCTTA
CCGCAATATCATTTGAAAATAGCCTAG

Protein sequence :
MARKITPLNDTQIRKAKPEDSPLRDGNGLLLVITSNSKLWRFRYERPFTKKRNDLSIGAYPDISLAQAREIREEYRALLA
QNIDPQTHRQQQEQAKANEISNTYENVAWAWLEHRKTKKNFSDNYQKDVIALIKNNLLPHFGRMPITQITAPMAIKAFKQ
YQDEGKLEKLKRAIQKHNEIMMFAVHREMIPFNPTANIAKEFDSPTVEHFKTIKPEDLGEFLYTLQNAQIHLQTRYLILW
QLLTMTRPNEAAKAKWADIDEKAKLWTIPAENMKRGIEHKITLSRQAIALLREIKKLSGGKTYLFPSVKNPQTHVNTQTA
NGAIKRMGYKGKLVAHGLRAIASTYLNEKGYNSDLIEVALSHLNSDRIKAAYDRGERLEQRFKLLQVWADFVEECSQGSL
PQYHLKIA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 6e-76 45
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 3e-66 42
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 3e-66 42
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 5e-66 42
unnamed AAA82714.1 integrase Not tested VPI Protein 1e-72 42
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 1e-72 42
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 1e-72 42
int AAK20773.1 integrase Not tested VPI Protein 1e-72 42
int AAK20803.1 integrase Not tested VPI Protein 1e-72 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D650_4460 YP_007665224.1 Integrase VFG1092 Protein 1e-66 42