|
Name : D650_16560 (D650_16560) Accession : YP_007666433.1 Strain : Mannheimia haemolytica USDA-ARS-USMARC-183 Genome accession: NC_020833 Putative virulence/resistance : Unknown Product : VirD4, Type IV secretory pathway, VirD4 component Function : - COG functional category : - COG ID : - EC number : - Position : 1596518 - 1598722 bp Length : 2205 bp Strand : - Note : VirD4, Type IV secretory pathway, VirD4 components of Bacteria UniRef RepID=Q1LKW3_RALME DNA sequence : ATGTCAGCTAAACATACCTTGGAGGCGTGGTTACGCCCTCCTGTTGAGTTTTTTCCGGCAATTGTTCATGCTTCTTGTGC TTTTGTCAGTGCTGCTGCGCCTTGGTCTCTAGCACTCCATCCAAGTATCGGCTATAGTATTGCAGCCGGTTTCGGTGCGT TGAGTTTTTATCGAGCAAAACAAGGATGGCAAATTGTTCGTTACCATCAAAATCTGAAACGTTTACCGAATTATTCAATG ACGAGTAAACAAATTCCGGTCAGTAATAAGTATCTATTTGTCGGCAAGGGATTTGAATGGAAACCTATTCACACTCAACG GCTACACGATTGTTTTTCGGATAACGGTTCAAAATATCTGGAGCCTTCTAAGCTATTTAAAATGGCTCGTGAGTATGAAA AACGCCACGAAAATTGGCTAACACGTCTTACCTCAAAGGATAGCCGGTGGAATCCGGTTAGACCTCTGCCACCGGTTGAG GGTATTCCTGCTATCCATGGAATTGAGCCGGATGAAGTTGATGTCGTTCAATCCGTTAGCTCTCGGGTTGGGCATACGGT AGTATTCGGTACAACACGTGTCGGTAAAACTCGTTTAGCTGAGGTCTTTGTTACCCAGGATATCCACCGAGGCAAAACAC CGGATGAGCGTGAGGTTGTTGTCTTTTTCGATCCGAAAGGCGATGCCGATATGCTCAAACGAATGTATGCAGAAGCAAAG CGAGCTGGAAGAGAAGATGAGTTTTATGTTTTCCATTTGGGATATCCTGAAATTTCGGCTCGCTATAACCCAGTGGGACG TTTTAATCGTATATCAGAAGTCGCTGGACGTATTTCAGGACAACTCAGTGGAGCCGGTAACTCAGCGGCATTTAAAGAGT TTGCTTGGCGATTTGTCAATATAGTTGCACGTGCATTAGTTGAATTAGGAAATCGTCCAAACTATGTTCAGATTTCCCAA TTTGTACAAAACATTGATTCATTATTCCTTGATTATGCGGAAAAATTTATTCGTAAAACTGACCCTAAAATTTGGGAAAA TTTAGCGACAATAGCCGCAGGATTAGATGAGAAAGCTCTTCCTTTTGGAATGAAAGATCGCCCTCTAATTTTTGTGATCA ACAAATATATCGCTGAAAGTGCAGTGTTTGACCCGATTTTACAAGGACTCGCCAGTGCCGTGCGGTATGACCGTACCTAT TTTGATAAAATTGTTGCTTCGTTATTGCCGTTATTGGAGAAATTAACGACCGGAAAAATTTCCGAACTTTTATCTCCGGA TTATGCCGATATTTTGGATGAACGCCCTATTTTTGACTGGGAATCCATTATCCGTAAACGAGGAATTGTTTATATTGGTT TGGATGCTCTCTCCGATGCTACAGTTGCTGCCGCAGTCGGAAACAGTATGTTTGCGGATTTAGTATCAATGGCAGGTCAT TTGTATAAATTTGGGACAAATGAGGGATTGCCGGGTGACATGGGCAGAAAAACCAAACTGGTGAAAATCAATCTTCATTG TGATGAATTCAATGAATTGATGGGCGATGAATTTATCCCTCTCATCAACAAAGGTGGTGGTGCCGGAGTACAAGTTACTG CTTATACGCAAACGCTCTCCGATATTGAAGCCCGTATTGGCAGTAAACCGAAAGCGGGACAAACCTTAGGTAACTTTAAT ACCCTATATATGCTCAGGGTAAAAGAACCCGCTACGGCAGAATTGCTTACAAAACAGTTACACGAAGTGACGATTAAGCG TAGCACGGTCACGTCCAGTACGACTGACTCCAGTAACCCGGATGATGACAAGGCATTTAGCTCAAATACAGGGCAGCGGA TTAGTGAAAGTACTGTTCCTATGCTGGTTCCTGCCAACATTACCAATTTACCAAAAGGACAAGCATTCGCTTTACTGGAT GGTAGTAAATTATGGAAAATTCGGATGCCGTTACCGGCTGTCGATAAAGATGATATGATGCCTCAATCTCTACGAGAGCT GACAGATTATATGCGTAAAAACTATCACGTTGTCGAAAATTGGTGGCAACCAGCATTTACAGAATATACGCCGTCCCGAG ATATTGCAGAAGCTTTTGAAGCGATGTCAGAGCCTCAATATAACTCACGGATAGACAATCAGGTCGATAATTTCGGCATA GATGAACCCTATGATATTGATGAAGAGGAAAATGACGATGAGTAG Protein sequence : MSAKHTLEAWLRPPVEFFPAIVHASCAFVSAAAPWSLALHPSIGYSIAAGFGALSFYRAKQGWQIVRYHQNLKRLPNYSM TSKQIPVSNKYLFVGKGFEWKPIHTQRLHDCFSDNGSKYLEPSKLFKMAREYEKRHENWLTRLTSKDSRWNPVRPLPPVE GIPAIHGIEPDEVDVVQSVSSRVGHTVVFGTTRVGKTRLAEVFVTQDIHRGKTPDEREVVVFFDPKGDADMLKRMYAEAK RAGREDEFYVFHLGYPEISARYNPVGRFNRISEVAGRISGQLSGAGNSAAFKEFAWRFVNIVARALVELGNRPNYVQISQ FVQNIDSLFLDYAEKFIRKTDPKIWENLATIAAGLDEKALPFGMKDRPLIFVINKYIAESAVFDPILQGLASAVRYDRTY FDKIVASLLPLLEKLTTGKISELLSPDYADILDERPIFDWESIIRKRGIVYIGLDALSDATVAAAVGNSMFADLVSMAGH LYKFGTNEGLPGDMGRKTKLVKINLHCDEFNELMGDEFIPLINKGGGAGVQVTAYTQTLSDIEARIGSKPKAGQTLGNFN TLYMLRVKEPATAELLTKQLHEVTIKRSTVTSSTTDSSNPDDDKAFSSNTGQRISESTVPMLVPANITNLPKGQAFALLD GSKLWKIRMPLPAVDKDDMMPQSLRELTDYMRKNYHVVENWWQPAFTEYTPSRDIAEAFEAMSEPQYNSRIDNQVDNFGI DEPYDIDEEENDDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| Pmu_03190 | YP_005176218.1 | conjugal transfer protein TraD | Not tested | ICEPmu1 | Protein | 0.0 | 98 |
| ORF C65 | AAN62159.1 | conserved hypothetical protein | Not tested | PAGI-2(C) | Protein | 0.0 | 60 |
| api27 | CAF28501.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 58 |
| YE3493 | YP_001007651.1 | TraG-family protein | Not tested | YAPI | Protein | 0.0 | 58 |
| YpsIP31758_3718 | YP_001402672.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 58 |
| traG | CAI36113.1 | putative TraG family conjugative protein | Not tested | PPHGI-1 | Protein | 0.0 | 58 |
| STY4562 | NP_458648.1 | hypothetical protein | Not tested | SPI-7 | Protein | 0.0 | 57 |
| t4260 | NP_807858.1 | hypothetical protein | Not tested | SPI-7 | Protein | 0.0 | 57 |
| PMI2588 | YP_002152307.1 | plasmid transfer protein | Not tested | Not named | Protein | 0.0 | 57 |
| ORF SG68 | AAN62290.1 | conserved hypothetical protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 57 |
| EXA47 | ABD94656.1 | TraG/TraD family protein | Not tested | ExoU island A | Protein | 0.0 | 56 |
| unnamed | ABR13375.1 | hypothetical protein | Not tested | PAGI-5 | Protein | 0.0 | 56 |
| RL047 | AAP84173.1 | conserved hypothetical protein | Not tested | PAPI-1 | Protein | 0.0 | 56 |
| traD | AAW83057.1 | TraD | Not tested | GGI | Protein | 2e-139 | 48 |
