Gene Information

Name : H681_03335 (H681_03335)
Accession : YP_007656089.1
Strain : Pseudomonas denitrificans ATCC 13867
Genome accession: NC_020829
Putative virulence/resistance : Virulence
Product : chaperone protein ecpD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 719364 - 720107 bp
Length : 744 bp
Strand : +
Note : COG3121 P pilus assembly protein, chaperone PapD

DNA sequence : 
ATGCGCAGGTCCCTTTCTCGCACCCTCCTGACCTCCCTGGTAGCCGTTGCCTCCCTGTCGTCCCTGATGGCGCAGGCCAA
TGTGGTGATTACCGGAACCCGGGTCGTCTATCCCGCAGCTGAGCGTGAAGTCACCGTGAAGCTGACCAACGCAGGAACAA
CGCCCGCCCTGGTGCAAGCCTGGGTGGACAGGGGGGATCCCAAGACCCGTCCCGAGCAATCCGACGCTCCATTCGTGGTG
ACGCCGCCGGTTGCCAGGCTCGATGCCAGCAAGGGGCAGACGTTGCGCATTGCGTTCACCGGCGAATCTCTTCCAGGCGA
TAGGGAGAGCGTGTTCTGGCTGAATGTTCTGGATGTCCCGCCGCTGCCAACGCAGAAGGACATCAACTACATGCAGGTGG
CCTACCGCTCCCGGATCAAGCTGTTCTATCGCCCGGCGGGCTTGCCCGGCAATCCCTCGCAGGCGGCCGAGAAACTGGCC
TGGACGCTGACGCCGGATGCTCACGGCCTGGCGCTGAATTGCACCAATGCCAGCGCCTACCACCTGTCCCTCGGCAGGGT
GACATTGCTCGTCGCCGGCAAACGCTTCACCAGCGATGCCGACGGCATGGTCAGGCCGGGTTCCACCATGAGCTTCCCTT
TGAAGGGGCTTGCTACTCCACCAACCGGCGAGATGAAGGTCACCTACAACTGGATCAACGACTACGGTGCGTCGATCCCG
GGTGAGTCCCTACTGCGACGCTGA

Protein sequence : 
MRRSLSRTLLTSLVAVASLSSLMAQANVVITGTRVVYPAAEREVTVKLTNAGTTPALVQAWVDRGDPKTRPEQSDAPFVV
TPPVARLDASKGQTLRIAFTGESLPGDRESVFWLNVLDVPPLPTQKDINYMQVAYRSRIKLFYRPAGLPGNPSQAAEKLA
WTLTPDAHGLALNCTNASAYHLSLGRVTLLVAGKRFTSDADGMVRPGSTMSFPLKGLATPPTGEMKVTYNWINDYGASIP
GESLLRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD33727.1 putative F17-like fimbrial chaperone Virulence PAI I 536 Protein 3e-40 42
ecpD1 AAO49832.1 pilin chaperone ecpD1 Not tested SPI-3 Protein 6e-45 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
H681_03335 YP_007656089.1 chaperone protein ecpD VFG1145 Protein 2e-37 45
H681_03335 YP_007656089.1 chaperone protein ecpD VFG0007 Protein 2e-37 45
H681_03335 YP_007656089.1 chaperone protein ecpD VFG1468 Protein 2e-40 42