Gene Information

Name : H681_20960 (H681_20960)
Accession : YP_007659599.1
Strain : Pseudomonas denitrificans ATCC 13867
Genome accession: NC_020829
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4691828 - 4693267 bp
Length : 1440 bp
Strand : +
Note : COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

DNA sequence : 
ATGGCACATATCCTCATCGTCGAAGACGAAACCATCATCCGCTCCGCCCTGCGACGGTTGCTCGAGCGGAACCAATACCA
GGTCAGCGAGGCTGGCTCGGTGCAGGAGGCCCAGGAGCGCTACAGCATCCCGTCGTTCGACATGATCGTCAGCGACCTGC
GCCTGCCGGGCGCACCGGGTACCGAACTGATCAAGCTGGCCCAGGGCACCCCGGTGCTGATCATGACCAGCTACGCCAGC
CTGCGCTCGGCGGTGGACTCGATGAAGATGGGCGCGGTGGACTACATCGCCAAGCCGTTCGACCACGACGAGATGCTCCA
GGCCGTGGCGCGCATCCTCAAGGATCGCCAGGAAGCCCGGAACGCCCCGACCGAAGCCCGTGGTAACGCCAAGGCGGCGG
AACGTAGCAGCGTGGGTAACACCGCTCCGGCGGACGGCGAGATCGGCATCATCGGCTCCTGCCCCCCCATGCAGGAGCTG
TACACCAAGATCCGCAAGGTCGCGCCGACCGACTCCAATGTACTGATCCAGGGCGAGTCCGGTACCGGCAAGGAACTGGT
GGCCCGCGCGCTGCACAACCTGTCCAAGCGCACCAAGGCGCCGCTGATCTCGGTGAACTGCGCGGCGATCCCGGAAACCC
TGATCGAATCCGAACTGTTCGGCCACGAGAAAGGCGCGTTCACCGGCGCCAGCGCGGGCCGCGCGGGCCTGGTGGAAGCC
GCCGACGGCGGCACCCTGTTCCTCGACGAGATCGGCGAACTGCCGCTCGAAGCCCAGGCGCGCCTGCTGCGCGTACTGCA
GGAAGGCGAGATCCGCCGGGTCGGCTCGGTACAGTCGCAGAAAGTGGACGTACGCCTGATCGCGGCGACCCACCGCGACC
TGAAGATGCTGGCCAAGACCGGCCAGTTCCGCGAAGACCTCTACTACCGCCTGCACGTCATCTCGCTGAAACTGCCGCCC
CTGCGCGAGCGCGGCCCCGACGTGATGGAGATCGCGCGCGCCTTCCTGACGCGGCAGTGCTCGCAGATGGGGCGCCCGGC
GCTGAGCTTCTCCCACGAGGCCGAACAGGCCATCCGTCACTATCCGTGGCCGGGTAACGTGCGCGAACTGGAGAACGCCA
TCGAGCGCGCGGTGATCCTCAGCGAAGGGCTGGAGATTCCCGCCGACCTGCTGGGCATCGACATCGAGCTGGATGATCTG
GAAGACGACTTCATGGACGAGGCCGAACCCCGTCCGAGCAACGGCAACACCAGCAATCACGAGCCTACCGAGGATCTGTC
GCTGGAGGACTACTTCCAGCACTTCGTCCTCGAACACCAGGACCACATGACCGAAACCGAACTGGCCCGCAAGCTGGGCA
TCAGCCGTAAATGTCTGTGGGAGCGCCGTCAGCGCCTGGGCATCCCGCGCCGCAAATCCGGTGCTTCGGCTGACTCGTAG

Protein sequence : 
MAHILIVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERYSIPSFDMIVSDLRLPGAPGTELIKLAQGTPVLIMTSYAS
LRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILKDRQEARNAPTEARGNAKAAERSSVGNTAPADGEIGIIGSCPPMQEL
YTKIRKVAPTDSNVLIQGESGTGKELVARALHNLSKRTKAPLISVNCAAIPETLIESELFGHEKGAFTGASAGRAGLVEA
ADGGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKMLAKTGQFREDLYYRLHVISLKLPP
LRERGPDVMEIARAFLTRQCSQMGRPALSFSHEAEQAIRHYPWPGNVRELENAIERAVILSEGLEIPADLLGIDIELDDL
EDDFMDEAEPRPSNGNTSNHEPTEDLSLEDYFQHFVLEHQDHMTETELARKLGISRKCLWERRQRLGIPRRKSGASADS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-67 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-67 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
H681_20960 YP_007659599.1 two-component response regulator BAC0467 Protein 5e-76 46
H681_20960 YP_007659599.1 two-component response regulator BAC0089 Protein 3e-73 46
H681_20960 YP_007659599.1 two-component response regulator BAC0022 Protein 3e-53 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
H681_20960 YP_007659599.1 two-component response regulator VFG0116 Protein 4e-70 45
H681_20960 YP_007659599.1 two-component response regulator VFG1249 Protein 7e-66 41