Gene Information

Name : lolD (H681_16145)
Accession : YP_007658637.1
Strain : Pseudomonas denitrificans ATCC 13867
Genome accession: NC_020829
Putative virulence/resistance : Resistance
Product : lipoprotein transporter ATP-binding subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3641330 - 3642028 bp
Length : 699 bp
Strand : -
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGAGTAAGTCGACCCCCAACGACCAGGCCGTCCTGAGCTGCCGTGACCTTGGCAAGCGCTACGAGGAAGGCCCGCAGTC
GGTCGAGGTGCTCTCCGGCGTGCAGCTGGAACTGCTGCCCGGCGAGCGCGTGGCCATCGTCGGCAGCTCCGGCTCGGGCA
AGAGCACCCTGCTGAACATGCTCGGCGGCCTCGATACGCCCAGCACCGGCAGCGTCTGGCTCGCTGGCGAACAGCTGTCG
GCGCTGAACGAGAAGCAGCGCGGCCTGCTGCGCAACCGCGCGCTGGGCTTCGTCTACCAGTTCCACCACCTGCTGCCGGA
ATTCACCGCGCTGGAGAACGTCTGCATGCCGCTGCTGATCGGCAAGACGCCGATCCCGGAAGCGCGCCAGCGCGCCACCG
CGCTGCTGGAGCGTGTGGGTCTGGGCCATCGCCTGAGCCACAAGCCGTCGGAGCTGTCCGGTGGTGAGCGCCAGCGCGTG
GCCATCGCCCGCGCCCTGGTGAACACGCCGAAACTGGTGCTGCTCGACGAGCCCACCGGCAACCTCGACCAGCACACCGC
CCACGGTATCCAGGAACTGATGCTGGAACTGTCGCAATCCCTGCGCACTGCCTTCCTGGTGGTGACCCACGACACCCACC
TCGCCCAGCAGATGGATCGTGTGCTGCGCCTGGAGGAGGGCCGGCTGGTCGCCGCCTGA

Protein sequence : 
MSKSTPNDQAVLSCRDLGKRYEEGPQSVEVLSGVQLELLPGERVAIVGSSGSGKSTLLNMLGGLDTPSTGSVWLAGEQLS
ALNEKQRGLLRNRALGFVYQFHHLLPEFTALENVCMPLLIGKTPIPEARQRATALLERVGLGHRLSHKPSELSGGERQRV
AIARALVNTPKLVLLDEPTGNLDQHTAHGIQELMLELSQSLRTAFLVVTHDTHLAQQMDRVLRLEEGRLVAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-27 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-28 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_007658637.1 lipoprotein transporter ATP-binding subunit NC_012469.1.7686878. Protein 2e-38 44
lolD YP_007658637.1 lipoprotein transporter ATP-binding subunit NC_008702.1.4606598. Protein 2e-32 44