Gene Information

Name : fliP (H681_08960)
Accession : YP_007657206.1
Strain : Pseudomonas denitrificans ATCC 13867
Genome accession: NC_020829
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1960262 - 1961053 bp
Length : 792 bp
Strand : +
Note : COG1338 Flagellar biosynthesis pathway, component FliP

DNA sequence : 
GTGACCCGTTCGCCGAATCCTTCCGCTCTGCTCGGCGCGCTCAAGCGCAGCGCGCCGTTGCTTCTGGGACTGCTGGCGCT
GGTCGTGCCGCAGGCTTTTGCCGCCGATCCGACGCAGATCTCGGCGATCACCGTGACCACCAACGCGCAGGGGCAGCAGG
AGTACTCGGTCAGCCTGCAGATCCTGCTGATCATGACCGCGCTGAGCTTCATCCCGGCGTTCGTCATGCTGATGACCAGC
TTCACCCGGATCATCATCGTCTTCTCCATCCTGCGCCAGGCGCTGGGCCTGCAGAGCACGCCGTCGAACCAGGTGCTGAT
CGGTCTGGCGCTGTTCCTCACCCTGTTCGTCATGGCGCCGGTGTTCGACAAGATCAACGCCAACGCGCTGCAGCCCTACC
TCAACGAGCAGATCCCGGCGCAGGAGGCGATCAGCCGCGCCGAGGTGCCGCTGAAAGCCTTCATGCTGGCGCAGACCCGG
CAGTCGGACCTGGAGCTGTTCGTGCGCCTGTCCAAGCGCACCGACATCCAGAGTGCCGACGCCACACCGCTGACGATCCT
GGTCCCGGCCTTCGTCACCTCGGAGTTGAAGACCGCGTTCCAGATCGGCTTCATGATCTTCATCCCGTTCCTGATCATCG
ACCTGGTGGTATCCAGCGTGCTGATGGCGATGGGCATGATGATGCTGTCGCCGCTGATCATCTCGTTGCCGTTCAAGATC
ATGCTGTTCGTGCTGGTGGACGGCTGGGCGCTGATCATCGGCACCCTGGCCGGCAGTTTCGGGACGGTGTAG

Protein sequence : 
MTRSPNPSALLGALKRSAPLLLGLLALVVPQAFAADPTQISAITVTTNAQGQQEYSVSLQILLIMTALSFIPAFVMLMTS
FTRIIIVFSILRQALGLQSTPSNQVLIGLALFLTLFVMAPVFDKINANALQPYLNEQIPAQEAISRAEVPLKAFMLAQTR
QSDLELFVRLSKRTDIQSADATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKI
MLFVLVDGWALIIGTLAGSFGTV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-33 44
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-33 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-33 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-32 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-32 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-33 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-30 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-30 41
escR AAC31528.1 L0049 Virulence LEE Protein 5e-31 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 7e-31 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 5e-31 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 7e-31 41
escR AAC38369.1 EscR Virulence LEE Protein 4e-30 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 6e-31 41
escR AAK26700.1 EscR Virulence LEE Protein 5e-31 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 6e-31 41
escR AAL57527.1 EscR Virulence LEE Protein 5e-31 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 5e-31 41
escR CAI43889.1 EscR protein Virulence LEE Protein 5e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_007657206.1 flagellar biosynthesis protein FliP VFG1259 Protein 2e-98 95
fliP YP_007657206.1 flagellar biosynthesis protein FliP VFG2016 Protein 3e-68 63
fliP YP_007657206.1 flagellar biosynthesis protein FliP VFG2494 Protein 4e-65 60
fliP YP_007657206.1 flagellar biosynthesis protein FliP VFG2338 Protein 6e-62 57
fliP YP_007657206.1 flagellar biosynthesis protein FliP VFG0394 Protein 1e-33 43
fliP YP_007657206.1 flagellar biosynthesis protein FliP VFG0519 Protein 1e-33 42
fliP YP_007657206.1 flagellar biosynthesis protein FliP VFG0188 Protein 3e-33 41
fliP YP_007657206.1 flagellar biosynthesis protein FliP VFG0044 Protein 1e-33 41
fliP YP_007657206.1 flagellar biosynthesis protein FliP VFG0827 Protein 3e-31 41
fliP YP_007657206.1 flagellar biosynthesis protein FliP VFG0715 Protein 2e-30 41