Gene Information

Name : fliP (H681_08960)
Accession : YP_007657206.1
Strain : Pseudomonas denitrificans ATCC 13867
Genome accession: NC_020829
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1960262 - 1961053 bp
Length : 792 bp
Strand : +
Note : COG1338 Flagellar biosynthesis pathway, component FliP

DNA sequence :

GTGACCCGTTCGCCGAATCCTTCCGCTCTGCTCGGCGCGCTCAAGCGCAGCGCGCCGTTGCTTCTGGGACTGCTGGCGCT
GGTCGTGCCGCAGGCTTTTGCCGCCGATCCGACGCAGATCTCGGCGATCACCGTGACCACCAACGCGCAGGGGCAGCAGG
AGTACTCGGTCAGCCTGCAGATCCTGCTGATCATGACCGCGCTGAGCTTCATCCCGGCGTTCGTCATGCTGATGACCAGC
TTCACCCGGATCATCATCGTCTTCTCCATCCTGCGCCAGGCGCTGGGCCTGCAGAGCACGCCGTCGAACCAGGTGCTGAT
CGGTCTGGCGCTGTTCCTCACCCTGTTCGTCATGGCGCCGGTGTTCGACAAGATCAACGCCAACGCGCTGCAGCCCTACC
TCAACGAGCAGATCCCGGCGCAGGAGGCGATCAGCCGCGCCGAGGTGCCGCTGAAAGCCTTCATGCTGGCGCAGACCCGG
CAGTCGGACCTGGAGCTGTTCGTGCGCCTGTCCAAGCGCACCGACATCCAGAGTGCCGACGCCACACCGCTGACGATCCT
GGTCCCGGCCTTCGTCACCTCGGAGTTGAAGACCGCGTTCCAGATCGGCTTCATGATCTTCATCCCGTTCCTGATCATCG
ACCTGGTGGTATCCAGCGTGCTGATGGCGATGGGCATGATGATGCTGTCGCCGCTGATCATCTCGTTGCCGTTCAAGATC
ATGCTGTTCGTGCTGGTGGACGGCTGGGCGCTGATCATCGGCACCCTGGCCGGCAGTTTCGGGACGGTGTAG

Protein sequence :

MTRSPNPSALLGALKRSAPLLLGLLALVVPQAFAADPTQISAITVTTNAQGQQEYSVSLQILLIMTALSFIPAFVMLMTS
FTRIIIVFSILRQALGLQSTPSNQVLIGLALFLTLFVMAPVFDKINANALQPYLNEQIPAQEAISRAEVPLKAFMLAQTR
QSDLELFVRLSKRTDIQSADATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKI
MLFVLVDGWALIIGTLAGSFGTV

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
YPO0270	YP_002345352.1	type III secretion system protein	Virulence	Not named	Protein	3e-33	44
yscR	NP_456109.1	putative type III secretion protein	Virulence	SPI-2	Protein	1e-32	42
yscR	NP_805090.1	type III secretion system protein	Virulence	SPI-2	Protein	1e-32	42
ssaR	YP_216427.1	type III secretion system protein	Virulence	SPI-2	Protein	3e-33	42
ssaR	NP_460384.1	type III secretion system protein	Virulence	SPI-2	Protein	3e-33	42
ssaR	CAA68199.1	secretion system apparatus, SsaR	Virulence	SPI-2	Protein	2e-33	42
hrcR	ABA47279.1	HrcR	Virulence	S-PAI	Protein	3e-30	41
escR	YP_003236103.1	T3SS structure protein EscR	Virulence	LEE	Protein	6e-31	41
escR	AAK26700.1	EscR	Virulence	LEE	Protein	5e-31	41
escR	NP_290283.1	type III secretion system protein	Virulence	LEE	Protein	6e-31	41
escR	AAL57527.1	EscR	Virulence	LEE	Protein	5e-31	41
escR	CAC81847.1	EscR protein	Virulence	LEE II	Protein	5e-31	41
escR	CAI43889.1	EscR protein	Virulence	LEE	Protein	5e-31	41
escR	AAC31528.1	L0049	Virulence	LEE	Protein	5e-31	41
ECs4583	NP_312610.1	type III secretion system protein	Virulence	LEE	Protein	2e-30	41
escR	ACU09473.1	type III secretion system protein EscR	Virulence	LEE	Protein	5e-31	41
escR	YP_003223490.1	T3SS structure protein EscR	Virulence	LEE	Protein	7e-31	41
escR	AAC38369.1	EscR	Virulence	LEE	Protein	4e-30	41
escR	YP_003232138.1	type III secretion system protein	Virulence	LEE	Protein	7e-31	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
fliP	YP_007657206.1	flagellar biosynthesis protein FliP	VFG1259	Protein	2e-98	95
fliP	YP_007657206.1	flagellar biosynthesis protein FliP	VFG2016	Protein	3e-68	63
fliP	YP_007657206.1	flagellar biosynthesis protein FliP	VFG2494	Protein	4e-65	60
fliP	YP_007657206.1	flagellar biosynthesis protein FliP	VFG2338	Protein	6e-62	57
fliP	YP_007657206.1	flagellar biosynthesis protein FliP	VFG0394	Protein	1e-33	43
fliP	YP_007657206.1	flagellar biosynthesis protein FliP	VFG0519	Protein	1e-33	42
fliP	YP_007657206.1	flagellar biosynthesis protein FliP	VFG0188	Protein	3e-33	41
fliP	YP_007657206.1	flagellar biosynthesis protein FliP	VFG0044	Protein	1e-33	41
fliP	YP_007657206.1	flagellar biosynthesis protein FliP	VFG0827	Protein	3e-31	41
fliP	YP_007657206.1	flagellar biosynthesis protein FliP	VFG0715	Protein	2e-30	41