Gene Information

Name : LVISKB_0037 (LVISKB_0037)
Accession : YP_007652877.1
Strain : Lactobacillus brevis KB290
Genome accession: NC_020819
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein yycF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 32075 - 32872 bp
Length : 798 bp
Strand : +
Note : -

DNA sequence : 
GTGACACCCGATGGCTGGCCTGCCGGTAGTCCTGCAATTACCGGATTCATTTGTATTTCCCTTAAGGAGGAAATTTTTGC
TATGCCTAAGAAAATTCTCGTTGTTGATGATGAAAAGCCGATTTCTGATATTATGAAATTTAACCTCGAAAAAGAGGGGT
ATGAAGTAGCGGTTGCCTACGATGGTGAAGCAGCGGTGCAAGCCGTTGAAGAAGACGTCCCCGACTTAGTGATCCTAGAT
TTGATGTTGCCAAAGATTGATGGACTAGAAGTTGCTCGTGAGATTCGTAAGAAGCATGACATGCCGATTATCATGGTCAC
GGCTAAGGATTCTGAATTGGATAAGGTCTTGGGACTAGAATTGGGTGCCGACGATTATGTGACCAAGCCATTTTCTAATC
GAGAATTAGTGGCGCGGGTTAAGGCTAACTTACGGCGGCAAAACACGGCAGCCCATGCTCAACCCGAAGAACCAGAAAAC
CAAGATATTGAGATTGGCGATTTGACGATTCATCCAGAGGCTTACTCTGTTTCTAAGCGGGGTGCCAACATCGAGTTGAC
CCACCGTGAATTTGAATTGCTCCATTATCTAGCCCAACATATTGGGCAAGTTATGACGCGAGAACACTTACTACAAACGG
TGTGGGGTTATGACTACTTTGGTGATGTGCGAACGGTGGACGTCACAGTCCGGCGGTTACGGGAAAAGATTGAAGATAGC
CCGAGTCACCCAACGTGGTTAGTGACGCGTCGTGGGGTCGGTTACTACTTACGTAACCCAGATTCCGATCAAGCTTAA

Protein sequence : 
MTPDGWPAGSPAITGFICISLKEEIFAMPKKILVVDDEKPISDIMKFNLEKEGYEVAVAYDGEAAVQAVEEDVPDLVILD
LMLPKIDGLEVAREIRKKHDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQNTAAHAQPEEPEN
QDIEIGDLTIHPEAYSVSKRGANIELTHREFELLHYLAQHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDS
PSHPTWLVTRRGVGYYLRNPDSDQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 7e-34 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_012469.1.7685629. Protein 6e-69 69
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_002952.2859905.p0 Protein 9e-54 53
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF HE999704.1.gene2815. Protein 9e-49 53
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_002745.1124361.p0 Protein 1e-53 52
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_009782.5559369.p0 Protein 1e-53 52
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_002951.3237708.p0 Protein 1e-53 52
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_003923.1003749.p0 Protein 9e-54 52
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_002758.1121668.p0 Protein 1e-53 52
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_007622.3794472.p0 Protein 7e-54 52
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_009641.5332272.p0 Protein 1e-53 52
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_013450.8614421.p0 Protein 1e-53 52
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_007793.3914279.p0 Protein 1e-53 52
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF AF155139.2.orf0.gene Protein 1e-39 48
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF AE016830.1.gene1681. Protein 2e-45 47
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_012469.1.7686381. Protein 2e-41 47
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF AE000516.2.gene3505. Protein 1e-34 45
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF CP001918.1.gene5135. Protein 2e-31 44
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF FJ349556.1.orf0.gene Protein 5e-40 44
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_007622.3794948.p0 Protein 4e-38 44
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_003923.1003417.p0 Protein 4e-38 44
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_013450.8614146.p0 Protein 4e-38 44
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_002951.3238224.p0 Protein 4e-38 44
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_007793.3914065.p0 Protein 4e-38 44
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_002758.1121390.p0 Protein 4e-38 44
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_010079.5776364.p0 Protein 4e-38 44
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_002952.2859858.p0 Protein 4e-38 44
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF AF162694.1.orf4.gene Protein 5e-38 43
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF CP000034.1.gene3834. Protein 5e-36 43
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF CP001138.1.gene4273. Protein 4e-36 43
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF BAC0533 Protein 2e-36 43
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF NC_002695.1.915041.p Protein 5e-36 43
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF CP000647.1.gene4257. Protein 2e-36 43
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF CP004022.1.gene3215. Protein 3e-38 43
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF AE015929.1.gene1106. Protein 6e-32 43
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF AF130997.1.orf0.gene Protein 5e-35 42
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF DQ212986.1.gene4.p01 Protein 4e-37 42
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF AM180355.1.gene1830. Protein 1e-37 42
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF CP001485.1.gene721.p Protein 2e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF VFG1563 Protein 4e-34 42
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF VFG1702 Protein 6e-34 42
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF VFG1386 Protein 3e-31 42
LVISKB_0037 YP_007652877.1 transcriptional regulatory protein yycF VFG1389 Protein 4e-31 42