Gene Information

Name : LVISKB_1306 (LVISKB_1306)
Accession : YP_007654146.1
Strain : Lactobacillus brevis KB290
Genome accession: NC_020819
Putative virulence/resistance : Unknown
Product : Transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1322619 - 1324292 bp
Length : 1674 bp
Strand : +
Note : -

DNA sequence :
ATGCAAGACTATTATAACATGAATCAAACCACTTTGAGTATCACTTTAGACTATCTTCCTGAAGAAAACCATCCGGCAAG
ATACATCAATCAATTCGTGGAAAGCTTAAAACTGACCGATACATACCAGTTTGGCCGGCCCCGGGAATACGATCTAGGGG
CTCTACTAAAATTGGTTCTTTTGGCATACAGTTATGGTATTTTTAGCAGTCGTCAGATTGAAAGATTCGCGCGTGAAAAT
AAACCAGCCGGATGGCTGGTCAGCAACCAAGTTCCTTCGTATCGAACCATTTGTCGTTTTAGAATTTCCGATGAACTTGC
GAAATTGACCGAAGCAGGGTTAACGCAACTGACCACTTTTCTTCGTCAAAATAAGCTGATTGATGACGTCTCATTCATTG
ATGGTACTAAGATTCTAGCCGATGCGAACAAGTATAGCTTCGTTTGGAAAAAGAATACGATTCGGTTCGATGAAATGAAC
CGTGAAAAGCTGGTTGAACTGTTAGGCGAGCTACATGAGGCAAAAATCATCGGTGAAGTTCCGGCTGGGTCGAACTTAAC
ACCAGAGCTTTTGGAGATGATGATCAGTAAGGTTGAGGACCATTTAGTGGTTTTAGAGCAGAAAGTGGCGGAGACCGAAA
AGGTCTCGCCAAATCCAGCAAAACAAAAACGTCGCACGTTCCGAGCAAAGAAACGACTAGTTGAACGACGGGATAAGATG
CGGGAGCATCAAGACCAACAGTCAATCTATGGGCAACGAAACAGCTATTCCAAGACCGATCATGACGCCACCTTTATGCG
GGTCAAGGAAGATCCGATGCAAAATGGTCAATTGAAACCAGCGTACAATCTTCAGATTTCCACAAGCGGTCAGTTCATCA
CGGGTTACCAACTCTTTCAAAACCCAACAGATACCCGCACACTACAGCCATTCATCAAGCATTTACAGCAACACGGAACG
TTAGGCGCCACCATCGTGGCAGATGCTGGGTACGGCTCGGAAAGTAACTACCGTTTTCTAGAAGACAGCTTGCCTGAACA
TACGGCCCTAATACCTTATGGGACAATGATCAAAGAGAATAGTCGGAAGTGGAAAAGCGATGACCGCAAGGTCATGAACT
GGGACTACTATGAAGCCGATGATTACTATGTTGATAAAGGTGTACGGTTTAATTTTAAGGCGTATCGGAAAAGGACTGAT
AAGTATGGATTTATACGTGATTTTAAAGAGTATGTCGCCGAAAAACTAGATGAGAATCAGAATGTGATTTCCGAAGCCCT
CACGCCAAAAGGAAACCTACGAAGAATCCAAGTTAACAGCGCTTGGGAATACTTTAAAGCCAAGCAACGCGACCTTCTAT
CAACATCCCAAACAGCGGCCATCTACGCCCAACGAAAAATAGACGTGGAGCCAATTTTTGGAAAAATGAAGGCCTCTTTA
AGGTTCCATCGATTCTCGGTTCGCGGCCTAGACAGGGTCCGTAAGGAAGCCGGGATCGTGATTATGGCCTTGAATATCCA
GAAACTGGTTACACTGGTAGCCAACTCCAAGAGCAAAAGAATAGGACGAGAAAACAAAGATCGGTTTCTCGTCCTATTCC
ATTATAAAGAGACTAGTTATGTCACAGCCTCTTTTTGGTGTTATTGGCGTCGATATACCCGCTGCTCGTGTTGA

Protein sequence :
MQDYYNMNQTTLSITLDYLPEENHPARYINQFVESLKLTDTYQFGRPREYDLGALLKLVLLAYSYGIFSSRQIERFAREN
KPAGWLVSNQVPSYRTICRFRISDELAKLTEAGLTQLTTFLRQNKLIDDVSFIDGTKILADANKYSFVWKKNTIRFDEMN
REKLVELLGELHEAKIIGEVPAGSNLTPELLEMMISKVEDHLVVLEQKVAETEKVSPNPAKQKRRTFRAKKRLVERRDKM
REHQDQQSIYGQRNSYSKTDHDATFMRVKEDPMQNGQLKPAYNLQISTSGQFITGYQLFQNPTDTRTLQPFIKHLQQHGT
LGATIVADAGYGSESNYRFLEDSLPEHTALIPYGTMIKENSRKWKSDDRKVMNWDYYEADDYYVDKGVRFNFKAYRKRTD
KYGFIRDFKEYVAEKLDENQNVISEALTPKGNLRRIQVNSAWEYFKAKQRDLLSTSQTAAIYAQRKIDVEPIFGKMKASL
RFHRFSVRGLDRVRKEAGIVIMALNIQKLVTLVANSKSKRIGRENKDRFLVLFHYKETSYVTASFWCYWRRYTRCSC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAUSA300_0034 YP_492755.1 IS1272, transposase Not tested Type-IV SCCmec Protein 3e-74 43
SACOL0036 YP_184947.1 IS1272 transposase Not tested Type-I SCCmec Protein 3e-74 43
SAMSHR1132_00350 YP_005324559.1 putative transposase Not tested Type-IIIinv SCCmec Protein 3e-74 43
MW0034 NP_644849.1 hypothetical protein Not tested Type-IV SCCmec Protein 3e-74 43
unnamed BAA86649.1 hypothetical protein Not tested Type-I SCCmec Protein 2e-74 43
tnp YP_254534.1 IS1272 transposase Not tested ¥ðSh2 Protein 2e-57 41
SE0076 NP_763631.1 transposase Not tested SCCpbp4 Protein 5e-71 41