Gene Information

Name : hpaH (XCAW_00827)
Accession : YP_007648842.1
Strain : Xanthomonas citri Aw12879
Genome accession: NC_020815
Putative virulence/resistance : Virulence
Product : HpaH protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 950524 - 950940 bp
Length : 417 bp
Strand : +
Note : -

DNA sequence :
TTGTTTGCAGCAGCACTGGCATGCGCGGCGCCTTTCGCGCGCGCGGATTGCTTCGAGGAGGCCGCCGGATATCAGCACGT
CAACCCTTGGGTGCTGCGTGCCATTGCCTGGCAGGAATCGCGCGGTCGTGCCGACGCAGTCCATCGCAACAACAACGGCA
CGGTTGATTACGGGAAGATGCAGATCAACTCCATCCATCTGCGGCGGTTATCCAGCTACGGAATCTCCAGGGACGCATTG
ATGCATCCGTGCATCAGTGTGTATGTGGCAGCGTGGCGGTTGCGCGAGATGACCAACAAATACGGAAATACCTGGGCTGC
AGTAGGGGCCTACCATTCCGAAACGCCGGGGGAACGCGACAAGTATGCGCATGCCATTCACTCGATTCTGCTCAGGCGCG
GTGTGATTGCCGAATAG

Protein sequence :
MFAAALACAAPFARADCFEEAAGYQHVNPWVLRAIAWQESRGRADAVHRNNNGTVDYGKMQINSIHLRRLSSYGISRDAL
MHPCISVYVAAWRLREMTNKYGNTWAAVGAYHSETPGERDKYAHAIHSILLRRGVIAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hpa2 NP_640772.1 Hpa2 protein Virulence Hrp PAI Protein 5e-53 100
hpaH YP_362172.1 transglycosylase HpaH Virulence Hrp PAI Protein 3e-52 96
hpaH AAL78295.1 HpaH precursor Virulence Hrp PAI Protein 2e-52 96
XC_3001 YP_244069.1 Hpa2 protein Virulence Hrp PAI Protein 3e-51 92
hpa2 NP_636615.1 Hpa2 protein Virulence Hrp PAI Protein 3e-51 92
hpa2 AAF61278.1 Hpa2 precursor Virulence Hrp PAI Protein 9e-51 92
unnamed AAC38373.1 rOrf3 Not tested LEE Protein 1e-13 43
unnamed AAK26704.1 unknown Not tested LEE Protein 2e-14 41
Z5131 NP_290279.1 hypothetical protein Not tested LEE Protein 8e-14 41
ECs4579 NP_312606.1 hypothetical protein Not tested LEE Protein 8e-14 41
unnamed AAC31524.1 L0045 Not tested LEE Protein 5e-14 41
ECO111_3763 YP_003236099.1 hypothetical protein Not tested LEE Protein 6e-14 41
unnamed ACU09469.1 putative lytic transglycosylase Not tested LEE Protein 5e-14 41
ECO103_3629 YP_003223486.1 hypothetical protein Not tested LEE Protein 3e-14 41
ECO26_5260 YP_003232142.1 hypothetical protein Not tested LEE Protein 3e-14 41
st13 CAC81851.1 ST13 protein Not tested LEE II Protein 2e-14 41
unnamed CAI43885.1 hypothetical protein Not tested LEE Protein 2e-14 41
unnamed AAL57531.1 unknown Not tested LEE Protein 2e-14 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hpaH YP_007648842.1 HpaH protein VFG0994 Protein 1e-12 45
hpaH YP_007648842.1 HpaH protein VFG0719 Protein 5e-14 43
hpaH YP_007648842.1 HpaH protein VFG0823 Protein 2e-14 41