Gene Information

Name : XCAW_03984 (XCAW_03984)
Accession : YP_007651947.1
Strain : Xanthomonas citri Aw12879
Genome accession: NC_020815
Putative virulence/resistance : Unknown
Product : Transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4468731 - 4469741 bp
Length : 1011 bp
Strand : -
Note : -

DNA sequence :
ATGTTGACTCAGGAGCAGGCAGTGGAGATACGTGTGATGGCCCGCAGGGGCGAGAGTGTCAGAGCGATCGCGAAGCAATT
GGAGTGCTCGCGCAACACCGTGCGCAGGTACCTGCGCGATCAAGATGCGCGGCGGTACGGCCCGCGCGAGTCCAGGGCCT
GCAAGCTCGACGGCTACCAGTCCTATCTGCGTGAGCGCGTCGTGCAGGCGCATCCGCGCTGGATCCCGGCGACCGTGCTG
TTGCGCGAGATCCAGGGGCGCGGCTACACGGGCGGCATCAGCCAGCTCAAGGCCTTCCTGGCCCCGCTCAAGCAGTCCGA
GCCCGAGCCGCTGGTGCGCTTCGAGACGCCCCCGGGTCAGCAGATGCAGGTGGATTTCACTTACGTGCGCCGGGGGCGCG
ATCCGCTGCTGGCGCTGGTCGCCACCCTGGGCTACAGCCGGGCGAGCTACGTGAAGTTCGTGGCGTGCGCAGGCGAGGAC
ATGACCACCCTGTGCACCGGCCTGCGCGAGGCGTTCGATTACTTCGGCGGCGTGCCCGAGCATGTGCTGTTCGACAACAC
CAAGGCAGTCGTCATCGAGCGCGATGCCTACGGCGAAGGCCAGCACCGCTGGAACAGCGCACTGCGCGAGCTCGCCGATA
CCTGCGGTTTCAAGCCTCGTCTGTGCCGCCCCTACCGTGCCAAGACCAAGGGCAAGGTCGAGCGCTTCAATGCCTACCTC
AAGGGCAGCTTCGTGGTGCCGCTGGCGGCAACGCTGGAAGCCAGCGGGCTGCGGCTCGATGCCCACCTGGCCAACGTCCA
CGTGCGACGCTGGCTCGACGAAGTCGCCAATGCCCGTGTGCATGCCACCACCAAGGCGGTGCCGGCCGTGCGCCTGGCAG
AGGAGCGTGCAGTCATGTTGGCGGCACCGGCGCTGAAGGCGCCACCACCGATACACCAGCGTGTCGTCTTGCCGCTGCAG
AGCCTGCAGCATCCGCTGTGCGTGTACGACGCCTTGCTGGAGGTGGTGTGA

Protein sequence :
MLTQEQAVEIRVMARRGESVRAIAKQLECSRNTVRRYLRDQDARRYGPRESRACKLDGYQSYLRERVVQAHPRWIPATVL
LREIQGRGYTGGISQLKAFLAPLKQSEPEPLVRFETPPGQQMQVDFTYVRRGRDPLLALVATLGYSRASYVKFVACAGED
MTTLCTGLREAFDYFGGVPEHVLFDNTKAVVIERDAYGEGQHRWNSALRELADTCGFKPRLCRPYRAKTKGKVERFNAYL
KGSFVVPLAATLEASGLRLDAHLANVHVRRWLDEVANARVHATTKAVPAVRLAEERAVMLAAPALKAPPPIHQRVVLPLQ
SLQHPLCVYDALLEVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 9e-67 48
y2411 NP_669718.1 transposase Not tested HPI Protein 2e-66 48
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 9e-67 48
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 2e-66 48
unnamed CAA21403.1 - Not tested HPI Protein 2e-66 48
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 2e-66 48
api83 CAF28557.1 transposase Not tested YAPI Protein 2e-66 48
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 9e-67 48
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 9e-67 48
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 2e-66 48
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 2e-66 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XCAW_03984 YP_007651947.1 Transposase VFG1514 Protein 5e-67 48
XCAW_03984 YP_007651947.1 Transposase VFG1626 Protein 5e-67 48
XCAW_03984 YP_007651947.1 Transposase VFG1607 Protein 5e-67 48
XCAW_03984 YP_007651947.1 Transposase VFG1461 Protein 1e-66 47