Gene Information

Name : radC (XCAW_02418)
Accession : YP_007650400.1
Strain : Xanthomonas citri Aw12879
Genome accession: NC_020815
Putative virulence/resistance : Virulence
Product : DNA repair protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2690759 - 2691268 bp
Length : 510 bp
Strand : -
Note : -

DNA sequence :
ATGTCGCAACTGTCCTTTTCCTCTTTCGATTCGCTGCTGCACGTGCGCGATACCCAAGGCCGCTATCGGCTGGCCTCTGT
CGAACAGATCCTTGAAGCGGCACGCGAGGCTATCGACCAGAAGATGCAGCGCGGTACCGAGTTCAGTTCACCAGCCGTGG
TGAAGGAGTACCTACGCGCCAAACTGGCAGGCTTCGAGCATGAGGTGTTCGCCGTCCTGTTCCTCGACACACAGCATCGC
TTGATCGAGTACACCGAGATGTTCCGCGGCACCATCGACAGCGCATCCGTGCATCCGCGCGAGGTCGTCAAGGAGGCGCT
GCGGACCAATGCAGCGGCGGTGATCCTGGCACACAACCACCCCAGTGGGCATCCAGAGCCCAGCACTGCGGACAGGGCGC
TGACGCGGCAGCTTAAGGCAGCGTTGGAATTAGTGGACGTGCGCACGCTGGACCACATCATCGTCGCTGGCGGTGCTAAT
ACATCATTTGCAGAGCGCGGTCTGCTCTGA

Protein sequence :
MSQLSFSSFDSLLHVRDTQGRYRLASVEQILEAAREAIDQKMQRGTEFSSPAVVKEYLRAKLAGFEHEVFAVLFLDTQHR
LIEYTEMFRGTIDSASVHPREVVKEALRTNAAAVILAHNHPSGHPEPSTADRALTRQLKAALELVDVRTLDHIIVAGGAN
TSFAERGLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-40 64
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-40 64
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 9e-41 64
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 3e-36 57
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 2e-25 53
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 2e-25 53
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 9e-26 53
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 1e-25 53
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 1e-25 53
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 2e-25 53
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 9e-25 53
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 9e-25 53
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 2e-25 53
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 2e-25 53
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 2e-25 53
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 2e-25 53
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 2e-25 53
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 2e-25 53
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 2e-25 53
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 2e-25 53
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 2e-25 52
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 4e-31 51
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 2e-25 51
unnamed AAL08475.1 unknown Not tested SRL Protein 1e-25 51
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 6e-26 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
radC YP_007650400.1 DNA repair protein VFG1119 Protein 5e-41 64
radC YP_007650400.1 DNA repair protein VFG1617 Protein 7e-26 53
radC YP_007650400.1 DNA repair protein VFG1528 Protein 9e-26 53
radC YP_007650400.1 DNA repair protein VFG1678 Protein 6e-26 53
radC YP_007650400.1 DNA repair protein VFG0660 Protein 6e-26 53
radC YP_007650400.1 DNA repair protein VFG1066 Protein 5e-26 51