Gene Information

Name : tra5 (XCAW_02413)
Accession : YP_007650395.1
Strain : Xanthomonas citri Aw12879
Genome accession: NC_020815
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2688513 - 2689304 bp
Length : 792 bp
Strand : -
Note : -

DNA sequence : 
ATGTGCCGGGTTTTGCGGGTGAACCGGGCTGGATACTACGCGTGGCTAAAGTCGCCCGACAGTGAACGCGCCAAGGAAGA
CGAACGCCTGCTGGGGCTGATCAAGCACCACTGGTTGGCCAGCGGCAGTGTCTATGGGCATCGCAAGATTGCCAAGGATC
TACGCGATCTGGGTGAGCGTTGCAGTCGCCATCGGGTGCATCGATTGATGCGCACCGAGGGACTGCGTGCCCAGGTGGGC
TATGGCCGCAAGCCGCGCTTCCATGGCGGAACGCCGTGCAAGGCGGCAGCCAACCTGCTGGATCGACAGTTCGACGTGAC
CGAGCCGGACACGGCCTGGGCGAGCGACTTCACCTTCATCCGTACGCATGAAGGCTGGATGTACCTGGCTGTGGTGATCG
ATCTGTTTTCCAGGCAGGTCGTCGGCTGGGCGATGCGCGATCGAGCCGATACCGAGTTGGTCGTGCAGGCCTTGCTGTCG
GCGGTGTGGCGGCGCAAACCCAGCGCTGGTTGCCTGGTTCATTCGGACCAGGGGTCTGTCTACACCAGCGATGACTGGCG
CAGTTTCCTGGCGTCCCATGGCTTGGTGTGCAGCATGAGTCGGCGTGGCAACTGCCATGCACAACGCACCGGTGGAGAGC
TTCTTTGGTCTGCTCAAACGCGAGCGGATCAGGCGGCGGATCTACCCCACCAAGGACGCCGCACGCGCCGAGGTGTTCGA
CTACATCGAGATGTTCTACAACCCACAACGCCGTCATGGTTCAACTGGCGACCTGTCCCCTGTAGAGTTTGA

Protein sequence : 
MCRVLRVNRAGYYAWLKSPDSERAKEDERLLGLIKHHWLASGSVYGHRKIAKDLRDLGERCSRHRVHRLMRTEGLRAQVG
YGRKPRFHGGTPCKAAANLLDRQFDVTEPDTAWASDFTFIRTHEGWMYLAVVIDLFSRQVVGWAMRDRADTELVVQALLS
AVWRRKPSAGCLVHSDQGSVYTSDDWRSFLASHGLVCSMSRRGNCHAQRTGGELLWSAQTRADQAADLPHQGRRTRRGVR
LHRDVLQPTTPSWFNWRPVPCRV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-26 43
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 3e-26 43
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-26 43
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-26 43
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-26 43
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-26 43
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 4e-26 43
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 4e-26 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tra5 YP_007650395.1 transposase VFG1122 Protein 2e-26 43