Gene Information

Name : tra5 (XCAW_02099)
Accession : YP_007650086.1
Strain : Xanthomonas citri Aw12879
Genome accession: NC_020815
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2311051 - 2311953 bp
Length : 903 bp
Strand : +
Note : -

DNA sequence :
ATGGGCTTCATCGACGCACAACGCGAGCACTTCGGGGTCGAGTCGATCTGCAAAGCCTTGCAGGTTGCCCCGTCGGGCTA
TTGGCGCCGTGCTGCACGCCGCAGCAACCCGGCGTTGCTGCCGGCTAGGGCCAAGGGCGATGCCGAACTGGTGCCGCAGA
TCGAGCGCGTGTGGACCAGCAACCTGCAGGTCTACGGCTACCGCAAGGTCTGGCGACAGATGCTGCGCGAAGGCACGGCC
GTTGCGCGCTGCACGGTCGAGCGGCTGATGCGGCTCAAGGGTTTGCAGGGCGCGCGACGCGGCAAGAAGATCCTAACCAC
GGTGCCGGATGCCAAGGCGCCGTGTCCGCTGGATCGGGTGAACCGGCAGTTCAAGGCCGACAAGCCGAACCAGTTGTGGG
TCAGTGACTTCACCTACGTCTCGACCTGGCAGGGCATGGTCTACGTGGCCTTCGTCGTGGACGTGTACGCGCGGTTCATC
GTGGGTTGGCGGGTCAGCCGTTCGATGCGAACGGATTTTGTGCTCGACGCGCTGGAGCAGGCGCTGTACGCGCGCAAGCC
CGAGCGCGATGGCGCCTTGATCCATCACTCGGACCGCGGCTTGCAATACGTCAGCATCCGCTACAGCGAGCGGCTGGCCG
AAGCGGGCATCGAGCCCTCGGTAGGCAGCAAGGGTGACAGCTATGACAACGCCCTGGCCGAGACCATCAACGGCTTGTAT
AAGACCGAACTGATCCACCGCCGGGCGCCCTGGAAGAGCAAGGAAGCCGTTGAACTCGCCACGCTCGAATGGGTCTCGTG
GTTCAACCATCACCGGTTGATGGAGTCCCTCGGCTACATCCCGCCGGCCGAAGCCGAGGCTAACTACCATTGGCAACTCG
CAGGTCAGGCCATGTCGGTCTGA

Protein sequence :
MGFIDAQREHFGVESICKALQVAPSGYWRRAARRSNPALLPARAKGDAELVPQIERVWTSNLQVYGYRKVWRQMLREGTA
VARCTVERLMRLKGLQGARRGKKILTTVPDAKAPCPLDRVNRQFKADKPNQLWVSDFTYVSTWQGMVYVAFVVDVYARFI
VGWRVSRSMRTDFVLDALEQALYARKPERDGALIHHSDRGLQYVSIRYSERLAEAGIEPSVGSKGDSYDNALAETINGLY
KTELIHRRAPWKSKEAVELATLEWVSWFNHHRLMESLGYIPPAEAEANYHWQLAGQAMSV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 4e-69 65
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 1e-60 62
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 1e-60 62
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 5e-76 60
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-75 60
Z1198 NP_286733.1 transposase Not tested TAI Protein 8e-76 60
Z1638 NP_287141.1 transposase Not tested TAI Protein 8e-76 60
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 6e-76 60
Z1221 NP_286756.1 transposase Not tested TAI Protein 3e-76 60
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 1e-75 58
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 1e-75 58
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 1e-75 58
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 4e-77 58
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 5e-77 58
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-78 58
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-78 58
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-77 57
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 3e-77 57
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-77 57
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-54 57
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-74 56
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-57 49
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 1e-41 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tra5 YP_007650086.1 transposase VFG1602 Protein 1e-74 56