Gene Information

Name : HydSN_0642 (HydSN_0642)
Accession : YP_007647053.1
Strain : Hydrogenobaculum sp. SN
Genome accession: NC_020814
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 561758 - 563068 bp
Length : 1311 bp
Strand : +
Note : IMG reference gene:2507463305; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide suga

DNA sequence :
ATGATAAACATAGAAGATTTTCTAAACAAAAAAGAGTCAATATGCGTAGTAGGGCTTGGGTATGTAGGGCTTCCATTGGC
TGTAGCGTTTGCAAGACATTTTAACGTAATAGGTTTTGATATAAACCAAATAAGGATAAACGAATTAAAATTAGGTATAG
ACAGGACAAAGGAAACTACTCCTGAAGAACTTCTAAATAGCAATATACTTTTTACAGCCAACGAAGAGTATATAAAAAAA
TGTAAATTTATTATTATTACAGTACCAACACCTATAGATAAACACAAAGTACCAGACCTAAAACCTATATTTAGTGCATC
TACTATAGTTGGAAGAAATTTGCAAAAAGACAGTATAGTAGTTTATGAATCTACAGTATATCCTGGTCTAACGGAAGAAG
AATGTGTACCTATATTAGAAAAAGAATCAGAACTTAAATGGAAAAAAGATTTTTTTGTGGGTTATTCACCAGAACGCATA
AATCCTGGTGATAAAATACACAGGTTTGAAAATATAGTAAAAGTAGTTTCTGGAGACAGTGAATATAGTCTTAATATAAT
AAGCGAAATTTACTCTAAGGTTGTAAAAGCTGGAATATTTAAAGCAAAATCTATAAAAGTTGCAGAAGCCGCTAAAGTTA
TAGAAAACACCCAACGAGATATAAACATTGCGCTTATGAACGAACTATCGATGATATTTCATAAAATGGGTATAGATACA
AAGGATGTATTAGAAGCCGCTTCTACCAAATGGAATTTTCTCAAATTTGAACCAGGCTTGGTAGGAGGGCATTGCATCAG
CGTAGACCCTTACTATCTAACATTCAAGGCTCAAGAGTTAGGCCACCATCCAGAGGTAATTCTTTCTGGTAGAAGAGTAA
ACGACAATATGCCAAACTTTGTAGTACAAAACGTTTTAAAGCTTTTAATAAAAGCAAAAAAACAGATAGAATCCTCAAAA
ATAATCATATTTGGGCTCTCTTTTAAAGAAAACATTCCAGACATAAGAAACTCAAAAGTAGTAGATATATACAACGAACT
TAAAGATTTTGGTATAAATACATACATATACGACCCATACGTATACAAAGATGAAGTGTTTAAAGAATATGGTATAGAAC
TTCTACAAGACCCTTATGAAAAAGCACCTTACGACGCTGTAATTGTAGCGGTAAAACACAACGCTTTTGGGGAATACGAT
ATAAGATTTTACGAAAATATTACTAAAAGCCCAAAAATTTTGATAGATATAAAAAGCTTATACAACAAAGATATTTTCTT
AAAAAACGGCTTTCTTTATTGGAGCTTATAA

Protein sequence :
MINIEDFLNKKESICVVGLGYVGLPLAVAFARHFNVIGFDINQIRINELKLGIDRTKETTPEELLNSNILFTANEEYIKK
CKFIIITVPTPIDKHKVPDLKPIFSASTIVGRNLQKDSIVVYESTVYPGLTEEECVPILEKESELKWKKDFFVGYSPERI
NPGDKIHRFENIVKVVSGDSEYSLNIISEIYSKVVKAGIFKAKSIKVAEAAKVIENTQRDINIALMNELSMIFHKMGIDT
KDVLEAASTKWNFLKFEPGLVGGHCISVDPYYLTFKAQELGHHPEVILSGRRVNDNMPNFVVQNVLKLLIKAKKQIESSK
IIIFGLSFKENIPDIRNSKVVDIYNELKDFGINTYIYDPYVYKDEVFKEYGIELLQDPYEKAPYDAVIVAVKHNAFGEYD
IRFYENITKSPKILIDIKSLYNKDIFLKNGFLYWSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-108 58
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 4e-97 55
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 4e-97 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HydSN_0642 YP_007647053.1 nucleotide sugar dehydrogenase VFG0431 Protein 2e-97 55