Gene Information

Name : HydSN_0459 (HydSN_0459)
Accession : YP_007646879.1
Strain : Hydrogenobaculum sp. SN
Genome accession: NC_020814
Putative virulence/resistance : Resistance
Product : Na+/H+ antiporter NhaD-like permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 386269 - 387570 bp
Length : 1302 bp
Strand : -
Note : IMG reference gene:2507463122; PFAM: Arsenical pump membrane protein; TIGRFAM: arsenical pump membrane protein

DNA sequence :
ATGCTAAAAGAGATAGAAAGCGTTATCATTTTTCTTCTTACGATGTTCCTTGTTATAAAACAACCAAAAAATATACCCAT
TGGTATATCTGCTGTTGTTGGAGGGGTTTTGAGCTTTTTGCTTGGGATAGTAAATATAAACGATATATATGAGGTTATAA
AACTCGTATGGGATGCAAGCTTGGCTTTTATAGGCATTATCTTCATATCGGTGGTGCTTGACAACATAGGATTTTTTGAG
TGGATTTCGCTAAAAGCCATAGACAAAGCCAACGAAGATGGCATAAAGCTATATGTTTATATGCTTCTAATAGGAGCTTT
GATATCTATATTTTTAGCCAACGACGGCGCTGCTTTGATGCTAACCCCTATCGTTTATTCTAAGATAAAGCATTTAAATC
TTCAAGATGAACAAGCAAGAGCCTACATGGTAGGAGGAGGTTTTATATCTGATACTGCAAGTATTGGGCTTGTAATATCA
AATTTAACAAACATCATCACAGCGGATTTTTTTCACATAAGCTTTTTAGAGTATGCCAAATCTATGCTTCTTGTAAATAT
TGTATCTATCGTAAGTTCCATAGCGGTTTTACTTATTTATTATAAAAATCATCTTCCTAAAAGCTACAAAAAAGAGATTT
TAGAAGACAAAAACCCAGAAGAAGCCATAAAAGATAGATTTTTATTTTATTTGGCTTGGCCAATAGGTGCTTTAGCTATA
GGGCTTTTGATGGTATCCCACATATACAACATCCCAACATCTTTTATAATCATATTTGCCGGGATTTTGATATCTATAGG
AAGTTTAAAAAATAAAAAAGTAAATCTAAAACATATCATTTTCAAAGAAACCCCTTGGCAAATACTTATATTTTCAATAG
GTATGTACGTGGTGGTGTTTGGTCTTCAAAAAGCGTTTTTGTATCAGATAATGCCTGGTGTAATAAGATTTTTTATAGAG
GGTGGTAAATTTGTAGCAATTATGGGCGTAGGTGTGTTGTCAGGGGTTTTATCGGCTCTTATCAACAATCTTCCCACCGT
TATGCTTATAAATCTAAATATAAAACTTGCAAACCCGGCTGATCATATGAGCCATATTTTAGCCTTGGCAAATCTAATAG
GTACAGATATAGGTCCTAAGATGACACCTATTGGTTCTTTGGCAACACTTTTATGGCTTCACGTATTAAACAAAAAAGGT
TTAAACATATCTTATGCTTATTATATGAAAGTTGGTATTATCCTTACAATACCGGTTTTGATACTTACGCTTCTTAGTCT
TTATGTTTTTAGTTTATTTTAA

Protein sequence :
MLKEIESVIIFLLTMFLVIKQPKNIPIGISAVVGGVLSFLLGIVNINDIYEVIKLVWDASLAFIGIIFISVVLDNIGFFE
WISLKAIDKANEDGIKLYVYMLLIGALISIFLANDGAALMLTPIVYSKIKHLNLQDEQARAYMVGGGFISDTASIGLVIS
NLTNIITADFFHISFLEYAKSMLLVNIVSIVSSIAVLLIYYKNHLPKSYKKEILEDKNPEEAIKDRFLFYLAWPIGALAI
GLLMVSHIYNIPTSFIIIFAGILISIGSLKNKKVNLKHIIFKETPWQILIFSIGMYVVVFGLQKAFLYQIMPGVIRFFIE
GGKFVAIMGVGVLSGVLSALINNLPTVMLINLNIKLANPADHMSHILALANLIGTDIGPKMTPIGSLATLLWLHVLNKKG
LNISYAYYMKVGIILTIPVLILTLLSLYVFSLF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
arsB YP_252017.1 arsenical pump membrane protein Not tested SCCmec Protein 3e-76 44
arsB YP_005754065.1 arsenical pump membrane protein Not tested Type-XI SCCmec Protein 9e-71 42
SH0109 YP_252024.1 arsenical pump membrane protein Not tested SCCmec Protein 1e-73 41
arsB2 YP_001007633.1 arsenical pump membrane protein Not tested YAPI Protein 3e-64 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HydSN_0459 YP_007646879.1 Na+/H+ antiporter NhaD-like permease BAC0574 Protein 1e-75 44
HydSN_0459 YP_007646879.1 Na+/H+ antiporter NhaD-like permease BAC0575 Protein 2e-75 43
HydSN_0459 YP_007646879.1 Na+/H+ antiporter NhaD-like permease BAC0576 Protein 1e-65 41
HydSN_0459 YP_007646879.1 Na+/H+ antiporter NhaD-like permease BAC0578 Protein 5e-65 41
HydSN_0459 YP_007646879.1 Na+/H+ antiporter NhaD-like permease BAC0031 Protein 9e-66 41