Gene Information

Name : HydSN_1175 (HydSN_1175)
Accession : YP_007647562.1
Strain : Hydrogenobaculum sp. SN
Genome accession: NC_020814
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1057076 - 1057753 bp
Length : 678 bp
Strand : +
Note : IMG reference gene:2507463838; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGAGTCTTAAAGCTCTTATAGTAGAAGATGATGAGCTTTTACTAGAAACGTTAGAAAAGGGGTTTAGACACGAGGGATT
TGAAGTAGATATAGCAAAAGACGGCTTTCAGGCTCTTCAAAAGGCAAAAACAAACAGCTACGATATCATAATTCTCGATG
TTGTAATTCCCAAAATAGACGGTGTAAAAGTATGTAAACAGTTAAGACTTCAAAGTGAAATCCCCATTATTATGCTAACG
GCAAAATCCCAGCTAGAGGATAAGCTAGAGGGCCTTGAAGCAGGAGCAGACGATTACATCACAAAGCCCTTTTCTTTTAA
AGAACTGATAATGAGGGTAAAAACCGTTTTAAGACGTTATAACAAAGTGCAAGAAGAAAAGATAGTTTTAAAAGACCTCA
CAATGGATTTAAAAGATTTTAAAGTGTTTTATAAAGGAAAAGCCATAAACCTTACACCAAAAGAGTTTGAGCTTTTAAAA
GTTTTAGCTCAAAATCCAAACAAGATCATAAGAAGAGAAGTGCTATTAAACAAAGTATGGGGCATAGCCTCCGATTACGA
TTCAAACATCGTAGATGTCTATATAAAAAATATTCGGAACAAACTAGACGACAAACCCCCAAAACTCATCCTCACCATAA
GAGGAAGAGGCTATATGCTAAGCACAGAGCAAAGTTGA

Protein sequence :
MSLKALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVKVCKQLRLQSEIPIIMLT
AKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNKVQEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLK
VLAQNPNKIIRREVLLNKVWGIASDYDSNIVDVYIKNIRNKLDDKPPKLILTIRGRGYMLSTEQS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-34 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein AE015929.1.gene1106. Protein 6e-35 46
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_003923.1003417.p0 Protein 4e-39 46
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_013450.8614146.p0 Protein 4e-39 46
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_002951.3238224.p0 Protein 4e-39 46
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_007793.3914065.p0 Protein 4e-39 46
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_002758.1121390.p0 Protein 4e-39 46
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_010079.5776364.p0 Protein 4e-39 46
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_002952.2859858.p0 Protein 4e-39 46
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_007622.3794948.p0 Protein 4e-39 46
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_002952.2859905.p0 Protein 6e-34 45
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_007793.3914279.p0 Protein 4e-34 45
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_003923.1003749.p0 Protein 4e-34 45
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_002745.1124361.p0 Protein 4e-34 45
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_009782.5559369.p0 Protein 4e-34 45
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_002951.3237708.p0 Protein 4e-34 45
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_007622.3794472.p0 Protein 6e-34 45
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_002758.1121668.p0 Protein 4e-34 45
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_009641.5332272.p0 Protein 4e-34 45
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_013450.8614421.p0 Protein 4e-34 45
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_012469.1.7686381. Protein 1e-31 44
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein NC_012469.1.7685629. Protein 4e-28 43
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein AE000516.2.gene3505. Protein 3e-34 43
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein BAC0125 Protein 3e-37 42
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein BAC0111 Protein 1e-34 42
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein BAC0308 Protein 2e-32 42
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein BAC0197 Protein 1e-34 42
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein HE999704.1.gene2815. Protein 2e-30 42
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein AF155139.2.orf0.gene Protein 2e-28 41
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein AE016830.1.gene1681. Protein 6e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein VFG0596 Protein 2e-34 43
HydSN_1175 YP_007647562.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein VFG1389 Protein 2e-36 42