Gene Information

Name : A11S_1969 (A11S_1969)
Accession : YP_007643390.1
Strain : Micavibrio aeruginosavorus EPB
Genome accession: NC_020812
Putative virulence/resistance : Virulence
Product : Manganese ABC transporter, inner membrane permease protein SitD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2020246 - 2021088 bp
Length : 843 bp
Strand : +
Note : -

DNA sequence :
ATGGACACGCTGTATTCATTCCTGATCGAACCGCTGTCGCATGATTTTATGCAACGCGCCCTGATCATCTCCACCATGAT
CGGCGTGGTGTGTTCGGTGTTTTCCTGTTTCCTGGTCCTCAAGGGCTGGTCCCTGATGGGGGACGCCGTATCGCATGCCG
TATTGCCCGGCATTGCCATTGCCTATGTCATTGGCATGCCGATGGCGATTGGCGCCTTTGTCGCCGGACTGCTCTGCGCC
GTCGGGACGGGGTATTTAAAAAATAACAGCCGGGTGAAGGAAGATGCCGTGATGGGTATTCTTTTTTCCGGTATGTTTGC
GCTCGGCCTCGTCCTGCTGACCAAAATTGAAACCGACGTGCATTTGCTCCACATCCTGTTCGGCAACGTCCTGGGAGTTT
CCACCCGCGATATGGTTGAGGCGGGAAGTATTTCCGCCATCGTCACCGCCATCATGGTGATCAAACGCCGCGACTTGATG
CTGTATTGCTTTGACCCGGCCCACGCCGCCGTTCTGGGCCTGCCCATCAAATTCTTGCATTTCGGCCTGCTGATCCTTCT
GGCCCTGACCATCGTTTCCGCATTGAAAGCCGCCGGCATTATTCTGGTGGTCGCCATGTTGATTGCGCCGGGGGCGATTG
GCTTCCTGCTGACCCGGTCGTTTGACCGCATGATGATGGTGGCGGTTGGTGTTTCGGTCTTTTCCTGCCTGGCCGGAACG
ATTATAAGTTTCCACATCGATGCGGCGACGGCCCCATTGATCGTTGTTATTCAATCCCTGTTCTTTCTGGGGGCTTTGGT
GTGGTCCACCACGCGCCGCCCAACGGTAAAGGCACACACATGA

Protein sequence :
MDTLYSFLIEPLSHDFMQRALIISTMIGVVCSVFSCFLVLKGWSLMGDAVSHAVLPGIAIAYVIGMPMAIGAFVAGLLCA
VGTGYLKNNSRVKEDAVMGILFSGMFALGLVLLTKIETDVHLLHILFGNVLGVSTRDMVEAGSISAIVTAIMVIKRRDLM
LYCFDPAHAAVLGLPIKFLHFGLLILLALTIVSALKAAGIILVVAMLIAPGAIGFLLTRSFDRMMMVAVGVSVFSCLAGT
IISFHIDAATAPLIVVIQSLFFLGALVWSTTRRPTVKAHT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-58 52
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-58 52
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-58 52
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-58 52
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-58 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A11S_1969 YP_007643390.1 Manganese ABC transporter, inner membrane permease protein SitD BAC0442 Protein 2e-72 61
A11S_1969 YP_007643390.1 Manganese ABC transporter, inner membrane permease protein SitD BAC0352 Protein 7e-59 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A11S_1969 YP_007643390.1 Manganese ABC transporter, inner membrane permease protein SitD VFG0528 Protein 7e-59 52