Gene Information

Name : A11S_1968 (A11S_1968)
Accession : YP_007643389.1
Strain : Micavibrio aeruginosavorus EPB
Genome accession: NC_020812
Putative virulence/resistance : Virulence
Product : Manganese ABC transporter, inner membrane permease protein SitC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2019385 - 2020242 bp
Length : 858 bp
Strand : +
Note : -

DNA sequence : 
ATGATCGACCTGCTTCTCGAACCCTTTACGTATATGTATATGGTGAAAGCCATTGGCGTCAGCGCGCTGGTCGGATGTGT
TTGCGCGTTCTTGTCCTCTTATCTGATGCTCAAGGGCTGGTCCCTGATGGGGGATGCGCTGGCTCACTCCATCGTCCCCG
GCGTGGCGTTGGCCTATCTCTTGGCGCTGCCTTATGCCGCCGGAGCCTTCTTCGCTGGCCTCCTGGCCGCGGGCAGCATG
GCGCTGGTCCGGCAAAAAACGAAATTGCGCGAAGACACCATTATCGGACTGATCTTCACAACATTCTTTGCCGTTGGCTT
GTTGCTGGTGTCCATCAACCCGATGGCGGTCAATATCCAATCCATCGTTCTGGGGAATATTCTAGCCATTTCCGATTCTG
ATGTAGCGCAGGTTGTCATCATTTCCGTGATCTGCCTGATCGCGCTCACTTTAAAATGGCGGGATTTGTTGGCGGTGTTT
TTTGATGAAAAACACGCCCAATCCATCGGCCTGCATGTCATGCCGCTGAAAATTTTGTTTTTCACCCTGCTCAGCGCCGC
GACCGTGGCCGCGCTACAGACCGTGGGCGCATGTCTGGTCATCGCCATGGTGGTGACACCGGGGGCCACGGCCTACCTTC
TGACCGACCGCTTTGGCCGTTTGATCGCCCTTGCCGTGACCATCGGGACGTTGACCAGCGCCATGGGGGCCTATGCCAGC
TATTACCTGAACGCCAATCCGGGTGGATTGATTGTCTGTTTGCAAACCCTTCTGTTCTTCGGTGCCTTTTTGTTTTCACC
GAAATACGGGTTGGTGCCGCGCAAACGCGCCATGCGCAACGCCGCGATGGGGGTGTAG

Protein sequence : 
MIDLLLEPFTYMYMVKAIGVSALVGCVCAFLSSYLMLKGWSLMGDALAHSIVPGVALAYLLALPYAAGAFFAGLLAAGSM
ALVRQKTKLREDTIIGLIFTTFFAVGLLLVSINPMAVNIQSIVLGNILAISDSDVAQVVIISVICLIALTLKWRDLLAVF
FDEKHAQSIGLHVMPLKILFFTLLSAATVAALQTVGACLVIAMVVTPGATAYLLTDRFGRLIALAVTIGTLTSAMGAYAS
YYLNANPGGLIVCLQTLLFFGAFLFSPKYGLVPRKRAMRNAAMGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-70 63
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-70 63
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-70 63
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 9e-71 63
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-70 63

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A11S_1968 YP_007643389.1 Manganese ABC transporter, inner membrane permease protein SitC BAC0441 Protein 8e-74 69
A11S_1968 YP_007643389.1 Manganese ABC transporter, inner membrane permease protein SitC BAC0351 Protein 5e-71 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A11S_1968 YP_007643389.1 Manganese ABC transporter, inner membrane permease protein SitC VFG0527 Protein 5e-71 63