Gene Information

Name : PCNPT3_01890 (PCNPT3_01890)
Accession : YP_007639158.1
Strain : Psychromonas sp. CNPT3
Genome accession: NC_020802
Putative virulence/resistance : Virulence
Product : TRAP-type C4-dicarboxylate transport system, large permease component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 443293 - 444576 bp
Length : 1284 bp
Strand : +
Note : COG1593 TRAP-type C4-dicarboxylate transport system, large permease component

DNA sequence : 
ATGTTTGCAACAATCGTGGGTTGGTTAGCGTTACTTTTTGCGGGTATGCCTGTTGGGTTTTCGTTGATTTTTATTGGTTT
TGTATTTTTAATTGCCACTCAAAGTATGGGCATTAACTTTGCTGCTCAGCAAATGGTAGATGGGCTAAACAATTTTACAT
TACTTGCGGTGCCTTTTTTCGTACTAACCGGGCATTTAATGAATAGCTCAGGTATTACTGAGCGTATTTTTAATTTTGCA
AAATCCATGGTAGGTCATATCACTGGTAGCTTAGGGCACGTAAACATTTTAGCGAGTTTACTCTTCTCTGGCATGTCAGG
TTCGGCTTTAGCGGATGCGGGAGGGCTTGGGCAATTAGAAATAAAATCGATGCGTGATGCAGGTTACGATGATGATTTTG
CGGGTGGATTAACGGCAGCTTCTTGTATTATAGGGCCTCTTGTTCCGCCTTCGATCCCTTTAATTATTTATGGTGTTGTC
TCTGGCACCTCTATCGGCGCTTTATTCTTAGCGGGCGCTATCCCCGGGTTATTATGTTGTATCGCCTTAATGGTCATGAC
TTATTTTATCGCGAAAAAACGTGGCTATAAAACACTGCCTAAAGCGTCATTGAAAGTGAAGATGGTTGCCTTTAAAGAAG
CCTTTTTATCTTTGTTAACGCCTTTTATTATTATCGGGGGCATTTTCTCCGGTAAATTTACGCCGACAGAAGCGGCTATT
ATCTCTTCGCTTTATGCTTTATTTTTGGGCGCGGTTGTTTATCGCACGTTAACCATTAAAAAGTTGATTAAGTTATTAAA
AGAGACAGTATCAACAACCTCTGTTGTGGCGTTAATGGTCATGGGCGTCACTGTATTTGGGTGGATCATCGCCAGGGTAC
AATTACCTCAACAAATGGCAGACTTTTTCTTGTCGATAAGTGATGATCCTCTTGTTCTTTTACTGATGATCAACTTATTA
TTATTATTTTTAGGCACCTTTATTGAATCATTAGCATTACTTTTATTATTGGTGCCCTTTTTAGTTCCTGTTGCTGTGTC
TGTGGGCATTGATCCTGTGCACTTTGGCGTCATGGCAATTTTAAACCTAATGATTGGTATTTTGACACCGCCTATGGGGA
TGGCACTATATGTGGTTGCTAAGGTGGGTAATATACCTTTCCATACAATAACCAAAGGGGTGCTTCCTCTATTGATCCCA
TTATTTGTTGTTTTATTCTTAGTGGCTGTTTTTCCTCAAATCACGCTGTTTTTACCGGGCGTTATGTTGGGGTATGGATT
GTAA

Protein sequence : 
MFATIVGWLALLFAGMPVGFSLIFIGFVFLIATQSMGINFAAQQMVDGLNNFTLLAVPFFVLTGHLMNSSGITERIFNFA
KSMVGHITGSLGHVNILASLLFSGMSGSALADAGGLGQLEIKSMRDAGYDDDFAGGLTAASCIIGPLVPPSIPLIIYGVV
SGTSIGALFLAGAIPGLLCCIALMVMTYFIAKKRGYKTLPKASLKVKMVAFKEAFLSLLTPFIIIGGIFSGKFTPTEAAI
ISSLYALFLGAVVYRTLTIKKLIKLLKETVSTTSVVALMVMGVTVFGWIIARVQLPQQMADFFLSISDDPLVLLLMINLL
LLFLGTFIESLALLLLLVPFLVPVAVSVGIDPVHFGVMAILNLMIGILTPPMGMALYVVAKVGNIPFHTITKGVLPLLIP
LFVVLFLVAVFPQITLFLPGVMLGYGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 2e-122 84
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 2e-122 84
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 1e-122 84

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCNPT3_01890 YP_007639158.1 TRAP-type C4-dicarboxylate transport system, large permease component VFG1110 Protein 8e-123 84