Gene Information

Name : PCNPT3_01880 (PCNPT3_01880)
Accession : YP_007639156.1
Strain : Psychromonas sp. CNPT3
Genome accession: NC_020802
Putative virulence/resistance : Virulence
Product : TRAP-type C4-dicarboxylate transport system, periplasmic component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 441765 - 442721 bp
Length : 957 bp
Strand : +
Note : COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component

DNA sequence : 
ATGAAAAGATTAACGGTAGGATTATTGTCTCTCGCTTTTGCTGCTAGCTCATATGCGCAGACAACGCTAAAAATGGGATT
ACAAGCGAGCGTTGGATCTGTTGAATATGTATCTGCAAAATTATTTTCCGATAAAATATCTGAATTGAGCAAAGGGGATA
TGAAAGTTTTACTCTATCCCAGTGCACAACTTGGAGATGATCGCGCAATGTTACAACAATTAACCTTGGGTGATTTAGAT
TTTACGTACGCAGAGTTTGGACGAATGGGGCTTTGGATCCCTCGTGCAGGTGCGGTTATGTTGCCTTATGTTATTAAGGA
TTTTGCACATATTAAACGTATTTTTAATTCTGATTTTGGTCTAAGTGTTCGTGATGAAATGTTAAATAAATATGGATGGA
GAGCACTTGATACTTGGTATAACGGTACTCGTCAAACGTCTTCTAATCGACCACTAAATAACATCGCTGATTTTAAAGGT
TTAAAATTACGCGTTCCTAATGCTAAAGCAAATTTGATGTTTGCAAAATATTCGGGAGCATCTCCAACACCGATGGCATT
CTCAGAAGTTTATTTAGCATTACAAACCAACGCGGTGGATGGTCAAGAAAATCCATTACCTACGTTTAATACCATGAAGT
TCTATGAAGTACAGAAACATTTGGCTATCACCAATCATATTGTGAACGATCAAATGTTATTAATTAGTAATAATACTTGG
AAAACACTGAGTGCAGAGCAACAAAACATTATTACTAAAGTGACTGCGCTTGTCGGTAAAAAACATACCGCATTTGTAGA
GCAACAAGAAAAAGAATTGATTAGCTTCTTTGAAAAAGAAGGTATTACAGTTAGCTACCCTGAATTACAACCATTCAGAG
ATGCAATGAAACCTATCTATGTTGAATTTGATAAGAAAATAGGTAGCAATGTGATCGAAGAAATCATGTCTAAATAG

Protein sequence : 
MKRLTVGLLSLAFAASSYAQTTLKMGLQASVGSVEYVSAKLFSDKISELSKGDMKVLLYPSAQLGDDRAMLQQLTLGDLD
FTYAEFGRMGLWIPRAGAVMLPYVIKDFAHIKRIFNSDFGLSVRDEMLNKYGWRALDTWYNGTRQTSSNRPLNNIADFKG
LKLRVPNAKANLMFAKYSGASPTPMAFSEVYLALQTNAVDGQENPLPTFNTMKFYEVQKHLAITNHIVNDQMLLISNNTW
KTLSAEQQNIITKVTALVGKKHTAFVEQQEKELISFFEKEGITVSYPELQPFRDAMKPIYVEFDKKIGSNVIEEIMSK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1779 NP_231414.1 C4-dicarboxylate-binding protein Not tested VPI-2 Protein 6e-109 70
dctP-1 YP_001217320.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 6e-109 70
VPI2_0027c ACA01844.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 4e-109 70

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCNPT3_01880 YP_007639156.1 TRAP-type C4-dicarboxylate transport system, periplasmic component VFG1112 Protein 2e-109 70