Gene Information

Name : PCNPT3_12670 (PCNPT3_12670)
Accession : YP_007641308.1
Strain : Psychromonas sp. CNPT3
Genome accession: NC_020802
Putative virulence/resistance : Virulence
Product : N-acetylneuraminate lyase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2997872 - 2998768 bp
Length : 897 bp
Strand : +
Note : COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase

DNA sequence : 
ATGAAAAAATTAACTGGATTAATCGCGGCACCACACACTCCCTTTAACAAAGACAACACGGTAGATCATGACGCCATTAA
ACAAATTGCTAAGCATCTGATCGCCAATAAAATTAGTGGAATATACATTTGTGGAACAACCGGTGAAGGCATACATTGCT
CGGTTGCAGAGCGTAAAGAAATTGCACAAACATGGGTTAAGGCCTGTGCAAATAAACTTGATATTATTGTGCACACAGGT
GCATTAAGTATTATCGACACATTAGAATTAACGCGTCATGCAGAGACGTTAGATATTCTCGCTACCTCCGTTATTGGGCC
TTGCTTCTTTAAGCCGGGATCTGTCGATGAACTCGTTAATTATTGCAAGGTCGTCGCAGCAGCCGCTCCATCTAAAGGTT
TTTATTATTATCATTCTGGTATGTCAGGTGTGACTGTTGATATGGAAGCCTTCTTGCTCAAAGCCGATACCTGTATTCCA
AATTTATCAGGGCTTAAATTTAATAGCGGTGATTTATATGAATATCAACGTTGCTTACGCGTTTGCGATGGAAAATTTGA
TATCCCATTTGGCGTAGATGAATTTCTTCCCGGTGCATTAGCCGTTGGCGCTAAAAGTGCGGTTGGCAGTACCTATAATT
ATGCAGCCCCTCTTTTTTATAACATCATAGACGCCTTTAACCGTGGCGACCAAAAAGCCGTTTTTGATGATATGAGCAAA
GTGATTAAATTAATTCGTGTGCTGGTTGAATTTGGTGGCGTTGCAGCCGGTAAAGCGGCCATGAGTTTACATGGGATAGA
CGTTGGCGACCCTCGCTTACCTTTAACACCATTAACATCAGAGCAGCGTAAGACTGTTGTAAAACGCATGCAAGATGCTG
GGTTTATCAACCTATAA

Protein sequence : 
MKKLTGLIAAPHTPFNKDNTVDHDAIKQIAKHLIANKISGIYICGTTGEGIHCSVAERKEIAQTWVKACANKLDIIVHTG
ALSIIDTLELTRHAETLDILATSVIGPCFFKPGSVDELVNYCKVVAAAAPSKGFYYYHSGMSGVTVDMEAFLLKADTCIP
NLSGLKFNSGDLYEYQRCLRVCDGKFDIPFGVDEFLPGALAVGAKSAVGSTYNYAAPLFYNIIDAFNRGDQKAVFDDMSK
VIKLIRVLVEFGGVAAGKAAMSLHGIDVGDPRLPLTPLTSEQRKTVVKRMQDAGFINL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VPI2_0024c ACA01841.1 dihydrodipicolinate synthase/N-acetylneuraminate lyase Not tested VPI-2 Protein 1e-103 70
VC1776 NP_231411.1 N-acetylneuraminate lyase Not tested VPI-2 Protein 2e-103 70
VC0395_A1374 YP_001217317.1 dihydrodipicolinate synthetase family protein Not tested VPI-2 Protein 2e-103 70

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCNPT3_12670 YP_007641308.1 N-acetylneuraminate lyase VFG1109 Protein 7e-104 70