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Name : PCNPT3_00900 (PCNPT3_00900) Accession : YP_007638960.1 Strain : Psychromonas sp. CNPT3 Genome accession: NC_020802 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : - COG ID : - EC number : - Position : 215717 - 217264 bp Length : 1548 bp Strand : + Note : COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB DNA sequence : ATGCCAAGCACTGAAGCCTCTATTGTTGCGCCTGATGATGAGGTGGACAATCAAATTGTCACGCCTTATGGGCAGTTACC TTTTTCTTTTTCAAAGAAACATGAAATTGTGCTTGTGTACAACGCGAAAAATATCGAGCTTTGTCATATTAAAGCGCCCA ATGCTGACTTGTTGTTAGAGGTGCGCCGCGTTATTGGCGGGGCGTTTAGCTTGCTTCAAGTAGAGAAATCTCACTTTAAT GAATTAGTGGCCTCAGCGTATCAATCGTCATCATCAGATGCACAGCAACTTATGCAAGATATCGGCAGTGATGATCTTTT TGCGCTTGCAGAAGATATGCCCGCAGATGAGGATCTGTTAGAAACAGAAGATGATGCGCCTATTATTAAGCTCATCAATG CGTTATTAGGTGAAGCAATTAAAGAAGAAGCCTCTGATATTCATATCGAAACGTTTGAAAACTCCCTTATTATTCGTTTT CGCATAGATGGTATTTTACGTGAAATTTTAAAACCTCAACGTAAACTTGCTGCGTTATTAGTGTCGCGCATTAAAGTCAT GGCGAAACTTGATATTGCAGAAAAAAGAGTACCACAAGATGGACGTATTTCATTGCGCATTGGTGGGCGCGCTGTCGATG TGCGAGTGTCAACAATGCCGGCCAGCCATGGTGAGCGTGTAGTGTTACGTATCCTTGATAAAAACGCCATAAAACTCGAC CTTGCCACGTTAGGAATGACGCCAGAAAATCATGAATTAATGCGCTCCTTGATCCATCAACCGCACGGTATTGTACTGGT GACAGGGCCGACGGGATCAGGTAAAAGTACCACGTTATATGCGGCGCTAATGGAAATAGACGCTAAAGAGCATAATATAT TAACTATCGAAGATCCCATTGAATATTCAATTGAGGGCATTGGCCAAACACAGGTTAATAGTAAAGTTGAGATGACTTTT GCACGTGGTTTGCGCGCTATTTTACGCCAAGATCCCGATGTGGTGATGATTGGTGAGATCCGCGACCTTGAAACCGCGCA AATAGCAGTACAAGCGAGTTTAACGGGGCATTTGGTGTTTTCTACCTTACATACCAATAGCGCCGTGGGCGCGGTAACAC GATTACGTGATATGGGGGTTGAACCTTTCTTACTCTCATCGAGTCTACTCGGGGTACTTGCGCAACGTTTGGTGCGCCGT TTATGTACTTATTGTAAAGCGCCACATATCGCCAGTAGTAAAGAAAAACATCTGTTAGGTGTTCCTAACACTGAAAAAGT GATTATTTATAATGCGAAAGGTTGTGAGCATTGTAATGCAACAGGCTATCGAGGTCGTATGGGGATCCACGAATTATTGA TCGTGACGGATGTGGTTCGTGAGTTAATGCATACCGGTGCCGGCGAGCAAGCGATTGAAAAAGTGATCCGTCAGTCTACG CCGAGCATTCGCCATGATGGTATGGCTAAAGTGTATCAAGGCTTAACCACATTAGAAGAAATAGTTCGTGTAACCAGTGA GGATGATTGTGGCAACCTTCCTATATAA Protein sequence : MPSTEASIVAPDDEVDNQIVTPYGQLPFSFSKKHEIVLVYNAKNIELCHIKAPNADLLLEVRRVIGGAFSLLQVEKSHFN ELVASAYQSSSSDAQQLMQDIGSDDLFALAEDMPADEDLLETEDDAPIIKLINALLGEAIKEEASDIHIETFENSLIIRF RIDGILREILKPQRKLAALLVSRIKVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPASHGERVVLRILDKNAIKLD LATLGMTPENHELMRSLIHQPHGIVLVTGPTGSGKSTTLYAALMEIDAKEHNILTIEDPIEYSIEGIGQTQVNSKVEMTF ARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVFSTLHTNSAVGAVTRLRDMGVEPFLLSSSLLGVLAQRLVRR LCTYCKAPHIASSKEKHLLGVPNTEKVIIYNAKGCEHCNATGYRGRMGIHELLIVTDVVRELMHTGAGEQAIEKVIRQST PSIRHDGMAKVYQGLTTLEEIVRVTSEDDCGNLPI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 4e-142 | 61 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-142 | 61 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PCNPT3_00900 | YP_007638960.1 | general secretory pathway protein E | VFG0182 | Protein | 2e-132 | 61 |
| PCNPT3_00900 | YP_007638960.1 | general secretory pathway protein E | VFG2048 | Protein | 7e-141 | 60 |
| PCNPT3_00900 | YP_007638960.1 | general secretory pathway protein E | VFG1876 | Protein | 1e-126 | 58 |
| PCNPT3_00900 | YP_007638960.1 | general secretory pathway protein E | VFG2426 | Protein | 3e-76 | 45 |
| PCNPT3_00900 | YP_007638960.1 | general secretory pathway protein E | VFG0112 | Protein | 1e-84 | 44 |
