|
Name : PCNPT3_00895 (PCNPT3_00895) Accession : YP_007638959.1 Strain : Psychromonas sp. CNPT3 Genome accession: NC_020802 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : - COG ID : - EC number : - Position : 213754 - 215730 bp Length : 1977 bp Strand : + Note : COG1450 Type II secretory pathway, component PulD DNA sequence : ATGAAGTCTTTAATAAGTAAATTTAAGGTATTAAGTGTTGCCTTATCTTGTTTAATCGCGTCGAGTGCATTGGCGACAGA ATACTCAGCAAGTTTTAAAAATGCAGATATTAATGAATTTATAAATATCGTGGGTAAAAATCTGCATAAAACGATCATAT TAGATCCCGCTATCCGAGGGAAAATTAATGTACGTAGTTATGATTTACTTAATGAGAAGCAATACTATCAATTCTTTTTA AACGTATTAGAAGTCTATGGTTTTGCTATCGTTGAAATGGATGATCATATTATTAAAGTTATCCGCGCTAAAGATGCAAA AGTATCGGCTATTCCTGTCGTTGATGATGGCAAGTTTTATCATGGCGATGAAATGGTCACGCGTGTTGTGCCAGTTATGA ATGTCTCTGTGCGCGAGTTAGCGCCACTACTGCGCCAACTTAACGATAATGCAGGTGGCGGTAATGTTGTACATTATGGG CCCTCTAACGTATTAATGATCACTGGCCGTGCGGCGGTTGTGAACCGTTTAGTTAAAATCGTACATCGCGTGGATAAAGC CGGCGATCACGAAGTTGATATTCTTAAATTAGAATACGCAAGTGCACTAGAGATGGTTAAAATCATCACGGCTATCCAAG CGCCGAGTAAAGGCTCTCAAAGTAGTGTGCCCAGTATTTTACGACCGCGTCTGGTTGCCGATGAGCGTACCAACTCTATT ATTATTAGTGGTGAGCCTAAAACGCGTGCGCGTATTATAAAATTAGTGAAATCGTTAGATAATGAGCTTCAGAGCAATGG TAATACTCGCGTGTTTTATCTTAAATATGCAAACGCCAAGGAAGTTGCGGATGTTTTAAAAGGCGTGAGCGAAGGCATAT CAAATATTGCGTCGAAAACGGGCACTAAGTCCAACTCCAAAAGCCTAAGTATAGAATCTCATGAAGGCACTAACGCGTTA ATTGTTTCGGCGCAGCCAGCCTTAATGGCGTCACTAAGCAGTGTTATCCGAAAATTAGATATTCGCCGCGCTCAGGTGTT AGTAGAAGCCATTATTGTTGAAATTTCAGAAGGTAACGGCATTAACTTAAGCGTGCAATTTGCAACCTCAGCCGGTGGTT CTCAATTTCACGGTAATGGGGCGACGACAGGAGATGCTATTAATGGGGCTTACCAAATTCGCCATGATGGCGATTTAAGT GATGTGAGCTCTGCAATTAGTAAAATAGCGGGTGGGGTAGTCGGGTATCTGGGCTCTAATTGGGGGGTCATGTTACAGGC GCTTAGTAGTTCGACGGGCTCTAACATATTAGCGACACCGAGTATCATGACCTTAGATAATCAAGAAGCAAGTTTTCTGG TGGGGGATGAAGTCCCCGTGTTAACCGGATCAACCTCGAGTGATGATAATGACAATCCATTTCAAACCATTGAACGTAAA GAGATTGGCGTAAAATTAAATGTCACCCCACAAATTAATGAAGGTGATTCCGTGCAATTGGTGATTGAGCAAGAAGTCTC TTCCATTAAAGACAGTACCAATACAGTGGATGTTGTTTTCTCTACGCGATCAGTGAAAACCACGGTGCTCGTAAAATCGG GACAAACGATTGTTATCGGGGGCTTAATCGATGAGAAAGTCATTGAGTCGGTAGATAAGATACCTTTGCTTGGTGATATC CCTTGGTTGGGTAATTTGTTTAAATCAACGCGTAATACTACGGAAAAGCGTAATTTAATGATTTTTTTACGCGCCACTAT TATTCGTGATGATGTCACCATGAATGAATTAAGTATGCGTAAATACTCGATGATCCGAGATATGCAGAAAAAACAACGCG AAATTGGCATTAACTTAATGCCAAATAGTGAGAGCCCTCTATTGCCGGAATGGGGTAAAACACAAGAAATTGATGCGGAT ACCTTTTTAAAGCAACGCGCGTTATTAAAGCAGGATCTTAATAATGCCAAGCACTGA Protein sequence : MKSLISKFKVLSVALSCLIASSALATEYSASFKNADINEFINIVGKNLHKTIILDPAIRGKINVRSYDLLNEKQYYQFFL NVLEVYGFAIVEMDDHIIKVIRAKDAKVSAIPVVDDGKFYHGDEMVTRVVPVMNVSVRELAPLLRQLNDNAGGGNVVHYG PSNVLMITGRAAVVNRLVKIVHRVDKAGDHEVDILKLEYASALEMVKIITAIQAPSKGSQSSVPSILRPRLVADERTNSI IISGEPKTRARIIKLVKSLDNELQSNGNTRVFYLKYANAKEVADVLKGVSEGISNIASKTGTKSNSKSLSIESHEGTNAL IVSAQPALMASLSSVIRKLDIRRAQVLVEAIIVEISEGNGINLSVQFATSAGGSQFHGNGATTGDAINGAYQIRHDGDLS DVSSAISKIAGGVVGYLGSNWGVMLQALSSSTGSNILATPSIMTLDNQEASFLVGDEVPVLTGSTSSDDNDNPFQTIERK EIGVKLNVTPQINEGDSVQLVIEQEVSSIKDSTNTVDVVFSTRSVKTTVLVKSGQTIVIGGLIDEKVIESVDKIPLLGDI PWLGNLFKSTRNTTEKRNLMIFLRATIIRDDVTMNELSMRKYSMIRDMQKKQREIGINLMPNSESPLLPEWGKTQEIDAD TFLKQRALLKQDLNNAKH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-140 | 48 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 9e-148 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PCNPT3_00895 | YP_007638959.1 | general secretion pathway protein D | VFG2047 | Protein | 1e-137 | 48 |
