Gene Information

Name : PCNPT3_08010 (PCNPT3_08010)
Accession : YP_007640378.1
Strain : Psychromonas sp. CNPT3
Genome accession: NC_020802
Putative virulence/resistance : Virulence
Product : DNA-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1898627 - 1898818 bp
Length : 192 bp
Strand : -
Note : COG3311 Predicted transcriptional regulator

DNA sequence : 
ATGAAATTCATTAGATTAAAAGATGTAATAGCAAAAACGGGTTTAGCACGCGCCACGATTTATAAATTTATGGCTAATGA
CAAATTCCCCAAAACAATCTCGCTGGGTGATCGCGCCGTCGCATGGTTGGATAGTGACGTTGATGAATGGATGCTTGGAC
GTATCGCATTGAGTGAAGAAGCAGAAGCTTAA

Protein sequence : 
MKFIRLKDVIAKTGLARATIYKFMANDKFPKTISLGDRAVAWLDSDVDEWMLGRIALSEEAEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0497 NP_230151.1 transcriptional regulator Not tested VSP-2 Protein 8e-16 54
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 3e-13 53
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 2e-13 53
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 3e-13 53
PMI2608 YP_002152324.1 prophage regulatory protein Not tested Not named Protein 1e-08 48
ORF SG104 AAN62325.1 phage-related protein Not tested PAGI-3(SG) Protein 3e-08 43
unnamed CAB46594.1 DNA-binding protein Not tested HPI Protein 9e-10 42
unnamed CAA21398.1 - Not tested HPI Protein 1e-09 42
VPI2_0041 ACA01856.1 predicted transcriptional regulator Not tested VPI-2 Protein 2e-12 42
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 3e-12 42
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 3e-12 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCNPT3_08010 YP_007640378.1 DNA-binding protein VFG1118 Protein 1e-13 53
PCNPT3_08010 YP_007640378.1 DNA-binding protein VFG1141 Protein 7e-13 42