Gene Information

Name : PCNPT3_06295 (PCNPT3_06295)
Accession : YP_007640037.1
Strain : Psychromonas sp. CNPT3
Genome accession: NC_020802
Putative virulence/resistance : Virulence
Product : iron (chelated) ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1481818 - 1482669 bp
Length : 852 bp
Strand : +
Note : COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGCAGACACTCTTTGATTTACTGATTGAACCTTTTAGTTATAGCTTTATGCAACAAGGTTTTCTCATTGTTATTTTACT
GGCCATTCCCAGCGCTTTATTGTCTTGTTTTTTAGTGCTCAAAGGATGGTCGTTAATGGGAGATGCTATTTCTCATTCTG
TTTTGCCGGGGATCGTGATTGCTTACATGTTAGCTATTCCCTACGCCATTGGCGCCTTTATTGCGGGCATTACCTGCGCA
ATATCGACAGGGTATATTTGTGATAATAGCCGACTTAAAGAAGACACCGTGATGGGAATTGTCTTTTCTAGCATGTTTGC
TTTAGGGCTTGTGATCATGACAAAAATCGAGTCTGACGTGCATCTTGATCGGATATTATTTGGCGACTTATTAGGGACAA
CTTGGCAAGATATTGGCGAAGTGGCTTGTATCAGCTTTATTGTTTCAGGTTTTATGATCATGAAAGGTAAAGACTTGCTG
CTGTTTGTTTTTGACAAACAACACGCACAAGCGATTGGTTTACCCGTAAGGTTTTTACATTATGCGCTACTGACTGTTTT
ATCCTTAACGATCGTCTTCTCTTTAAAAGCGGTCGGCATGATTTTAGTTATCGCCTTATTAATTGCCCCAGGTAGTATCG
CTTTTTTATTATCTAACAATTTTATGAGTATGTTAAAGCTCTCAATACTGATCTCATGTAGTTGCTCTTTTTTAGGTGTG
TATATTAGTTTCTATCTTGATAGCGCCCCTGCTCCGACAATTATTATGATCATGAGTTTGCTGTTTATTATTGTTTTTAT
TATTACCAGTCAAACACAAAAACGCAGAGTCGCGGGTAATAGCAGAGGTTAA

Protein sequence : 
MQTLFDLLIEPFSYSFMQQGFLIVILLAIPSALLSCFLVLKGWSLMGDAISHSVLPGIVIAYMLAIPYAIGAFIAGITCA
ISTGYICDNSRLKEDTVMGIVFSSMFALGLVIMTKIESDVHLDRILFGDLLGTTWQDIGEVACISFIVSGFMIMKGKDLL
LFVFDKQHAQAIGLPVRFLHYALLTVLSLTIVFSLKAVGMILVIALLIAPGSIAFLLSNNFMSMLKLSILISCSCSFLGV
YISFYLDSAPAPTIIMIMSLLFIIVFIITSQTQKRRVAGNSRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-63 54
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-63 54
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 7e-63 54
sitD NP_461785.1 permease Virulence SPI-1 Protein 9e-63 54
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-63 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCNPT3_06295 YP_007640037.1 iron (chelated) ABC transporter permease BAC0352 Protein 4e-63 54
PCNPT3_06295 YP_007640037.1 iron (chelated) ABC transporter permease BAC0442 Protein 4e-63 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCNPT3_06295 YP_007640037.1 iron (chelated) ABC transporter permease VFG0528 Protein 4e-63 54