Gene Information

Name : PCNPT3_06290 (PCNPT3_06290)
Accession : YP_007640036.1
Strain : Psychromonas sp. CNPT3
Genome accession: NC_020802
Putative virulence/resistance : Virulence
Product : iron-compound ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1480956 - 1481834 bp
Length : 879 bp
Strand : +
Note : COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGCTAGATTATTTATTAGAGCCCTTTCAATACCATTATATGATCAATGCCATTTTTGTAAGTGCACTCGTGGGCGCCGT
TTGTGCCTTTTTATCGGTGTATTTAATGCTTAAAGGTTGGTCTTTAATTGGTGATGCACTTTCTCACTCTATCGTACCCG
GCGTGGCTGGGGCATATATGTTAGGTTTGCCCTTTTCTTTAGGCGCTTTCTTTTCAGGTGGGCTGGCTGCTACCACCATG
TTATTTTTACAACGCCACTCAAAACTTAAAGAGGATGCCATTATAGGGCTGATTTTTACCTCTTTTTTTGGGTTAGGTTT
GTTTATGGTTTCTTTGTCCCCTACTTCCGTCAACATTCAAACTATCGTCTTGGGTAATATCCTTGCGATCACGCCAGATG
ACACCATACAATTGATGATCATAGGCTTTGTTACTTTGCTGATTTTAACCTGCAAGTGGAAAGACTTTATGGTGTTGTTT
TTTGATGAAAACCACGCAGTAAGCATTGGCCTTAACCCTACTTATTTAAAGATCCTCTTTTTCACCTTACTCAGCGCCTC
AACCGTGGCAGCGTTACAAACCGTGGGTGCTTTTTTAGTGATTGCCATGGTGGTAACACCCGGTGCCAGCGCCTATTTAC
TGAGTGATAAATTTAGCCACGTTATTATCATCAGCGTTCTCATTGGTACGTTTAGCTCTTTATTTGGTGCTTATCTCAGT
TATTTTGTCGATGGGGCGACCGGTGGCGTCATTATATTACTGCAAACACTCGTCTTTTTACTGTGTTTTGTTTTTGCGCC
CAAACATGGGTTACTCGCAAGCAAAAGAAAATGTAAACAACATCATGTAAAAGAGGCACCCCATGCAGACACTCTTTGA

Protein sequence : 
MLDYLLEPFQYHYMINAIFVSALVGAVCAFLSVYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFSLGAFFSGGLAATTM
LFLQRHSKLKEDAIIGLIFTSFFGLGLFMVSLSPTSVNIQTIVLGNILAITPDDTIQLMIIGFVTLLILTCKWKDFMVLF
FDENHAVSIGLNPTYLKILFFTLLSASTVAALQTVGAFLVIAMVVTPGASAYLLSDKFSHVIIISVLIGTFSSLFGAYLS
YFVDGATGGVIILLQTLVFLLCFVFAPKHGLLASKRKCKQHHVKEAPHADTL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-94 71
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-94 71
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-94 71
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-94 71
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-94 71

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCNPT3_06290 YP_007640036.1 iron-compound ABC transporter ATP-binding protein BAC0351 Protein 2e-94 71
PCNPT3_06290 YP_007640036.1 iron-compound ABC transporter ATP-binding protein BAC0441 Protein 2e-82 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCNPT3_06290 YP_007640036.1 iron-compound ABC transporter ATP-binding protein VFG0527 Protein 1e-94 71