Gene Information

Name : PCNPT3_06285 (PCNPT3_06285)
Accession : YP_007640035.1
Strain : Psychromonas sp. CNPT3
Genome accession: NC_020802
Putative virulence/resistance : Virulence
Product : iron-compound ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1480102 - 1480962 bp
Length : 861 bp
Strand : +
Note : COG1121 ABC-type Mn/Zn transport systems, ATPase component

DNA sequence : 
ATGCAGGGATTAACCGTAAATAATATAAGCGTAACCTACCGTAATGGTTTTAATGCATTAGAGAACGCAAGCTTTAGCCT
GCCTAAAGGCTCGATCACTGCATTAGTGGGTATTAATGGCAGTGGGAAATCAACATTATTCAAATCTATTATGGGTTTTG
TCTCCTTGAGTCAGGGTGAAGTGCTCATTCTTGATCTCCCTGTTAAAAAAGCATTAAAGCAAAACTTGGTGGCTTATGTG
CCACAAAGTGAAGAGATTGACTGGAACTTTCCTATTTTAGTTGAAGATGTTGTCATGATGGGACGTTATGGTTTTATGGG
GTTCTTGCGCCGTAGCTCGAAGAAAGATCATGAAATGGTAGAAGAAGCTTTGCAACGCGTGAATATGCAAGATTATCGTA
AAAGGCAGATAGGTGAACTCTCTGGTGGGCAGAAAAAACGTATCTTTTTAGCACGCGCATTGGCGCAAGAGGGACAAGTC
ATTTTACTTGATGAACCTTTTACCGGCGTTGACGTAAAAACTGAAGATCAAATAATGGCACTGCTTCGCGAGTTACGCGA
TGAAGGCAAGGTTATTTTAGTCTCTACCCATAATTTGGGTAATGTGCCTGATTTTTGTGATCGCACTATTTTGATAAACC
GTACGATTTTAGCCGCGGGTGAAACTAAAAAAGTCTTTACCCAAGAGAATTTACAAAAAGCGTTTGGCGGGACGTTACGC
CACTTTGTTTTATCGGGTAGCGACCTGCATAACGATGATGATGCGCGCAAAGTGACCGTTTTATCCGATCATGAGCGCCC
TGTTGTCCTTTATGGTGAAGATCAAGCCGGCCCCGCTTTAACGGAGAGACATAAATGCTAG

Protein sequence : 
MQGLTVNNISVTYRNGFNALENASFSLPKGSITALVGINGSGKSTLFKSIMGFVSLSQGEVLILDLPVKKALKQNLVAYV
PQSEEIDWNFPILVEDVVMMGRYGFMGFLRRSSKKDHEMVEEALQRVNMQDYRKRQIGELSGGQKKRIFLARALAQEGQV
ILLDEPFTGVDVKTEDQIMALLRELRDEGKVILVSTHNLGNVPDFCDRTILINRTILAAGETKKVFTQENLQKAFGGTLR
HFVLSGSDLHNDDDARKVTVLSDHERPVVLYGEDQAGPALTERHKC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-87 65
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-87 65
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-87 65
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 6e-86 64
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 6e-86 64
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 2e-42 43
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 3e-42 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCNPT3_06285 YP_007640035.1 iron-compound ABC transporter ATP-binding protein BAC0350 Protein 1e-87 65
PCNPT3_06285 YP_007640035.1 iron-compound ABC transporter ATP-binding protein BAC0440 Protein 1e-87 62
PCNPT3_06285 YP_007640035.1 iron-compound ABC transporter ATP-binding protein BAC0400 Protein 1e-48 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCNPT3_06285 YP_007640035.1 iron-compound ABC transporter ATP-binding protein VFG0526 Protein 1e-87 65