Gene Information

Name : PCNPT3_06280 (PCNPT3_06280)
Accession : YP_007640034.1
Strain : Psychromonas sp. CNPT3
Genome accession: NC_020802
Putative virulence/resistance : Virulence
Product : Iron transport protein, periplasmic-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1479206 - 1480102 bp
Length : 897 bp
Strand : +
Note : COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin

DNA sequence : 
ATGTTTAAATCGCTTTTTTTTAGCATGTCGCTTTGCGCTGTTATATTTACTAGCCCCCTACAAGCTAAAACAGATAGTCA
CAAGTTTAAAGTGATCACCACGTTCACTATTATTGCAGACATCGCCCAAAATGTGGCTGGAGATGCTGCGATTGTTGAGT
CTATTACTAAAGCGAATGCTGAAATACACAACTATCAAGCGACACCGGGTGATTTGCGCCGAGCGCAGCACGCCGATTTA
ATTCTTTATAATGGACTCAATTTAGAGCGTTGGTTTGATAAGTTTTTTGTACATCTTAAAAGTGTGCCACGTGTTGTTGT
GACTAAGGGCATAGAAGTCATGGGCATACATCAAGGCCCTTACGCCGGAAAACCGAATCCTCATGCATGGATGTCTGCAC
CTAACGCCCTTATTTATGTTGAAAATATCCGTAACGCGTTAGTTAAATACGATCCTAAAAACGCCTCTACTTATAACAAA
AACGCACAAAAATATTCAGCGGAGATACTACGCGCTGTCGAGCCTTTTAAAGCTCAAATAGATAACTTACCGGCAAGTAA
ACGCTGGCTTGTTACCAGTGAAGGTGCATTTAGTTACCTTGCCCGTGATTATAATTTAAAAGAGTTATTTTTATGGCCGA
TTAATGCCGACTCTCAAGGTACACCACAACAAGTAAGGCATGTTATCGATATTATGCGCAAGGAGCATATTAACGCCATC
TTTAGTGAAAGCACCGTTTCTGCAAAACCGGCCCAACAAGTTGCACGCGAAACAGGCTCTCATTATGCGGGCGTATTATA
TGTCGATTCTTTAAGTAATAAAGACGGCCCCGTTCCGACTTACATTGATTTACTCACCACGACGCTTAGCCAAATTGTAA
AAGGGATCAAAAAATAA

Protein sequence : 
MFKSLFFSMSLCAVIFTSPLQAKTDSHKFKVITTFTIIADIAQNVAGDAAIVESITKANAEIHNYQATPGDLRRAQHADL
ILYNGLNLERWFDKFFVHLKSVPRVVVTKGIEVMGIHQGPYAGKPNPHAWMSAPNALIYVENIRNALVKYDPKNASTYNK
NAQKYSAEILRAVEPFKAQIDNLPASKRWLVTSEGAFSYLARDYNLKELFLWPINADSQGTPQQVRHVIDIMRKEHINAI
FSESTVSAKPAQQVARETGSHYAGVLYVDSLSNKDGPVPTYIDLLTTTLSQIVKGIKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 2e-94 66
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 2e-94 66
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 2e-94 66
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-95 66
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-94 66

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCNPT3_06280 YP_007640034.1 Iron transport protein, periplasmic-binding protein BAC0349 Protein 8e-95 66
PCNPT3_06280 YP_007640034.1 Iron transport protein, periplasmic-binding protein BAC0439 Protein 3e-88 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCNPT3_06280 YP_007640034.1 Iron transport protein, periplasmic-binding protein VFG0525 Protein 8e-95 66