Gene Information

Name : XAC29_02075 (XAC29_02075)
Accession : YP_007634908.1
Strain : Xanthomonas axonopodis Xac29-1
Genome accession: NC_020800
Putative virulence/resistance : Virulence
Product : HrcV protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 476763 - 478700 bp
Length : 1938 bp
Strand : -
Note : COG4789 Type III secretory pathway, component EscV

DNA sequence : 
ATGCTAGGAGATCGCGTGCGAGCGACAAGGTATTTCGCTTACAGCGGCGAAGTCGCCATCGCCGCCTTGGTGGTGGCGGT
CATCGGGCTGATGATCCTGCCGCTGCCAACGCCGCTGATCGATACGCTGCTGGGCATCAACATCACCCTGAGCGTGGTGC
TGTTGATGGTCACGATGTATGTGCCCGACTCGATCTCGCTCTCGTCGTTTCCTTCCCTGCTGCTGTTCACCACACTGCTG
CGGTTATCCTTGAATATCGCCTCGACGAAGTCGATTCTGCTGCACGCCGAGGCGGGCCATATTATCGAGAGCTTTGGCGA
GTTGGTGGTCGGCGGCAATCTGGTGGTAGGCCTGGTCGTTTTCTTGATCATCACCACCGTGCAGTTCATCGTGATCGCAA
AGGGCTCCGAACGCGTTGCCGAGGTCGGTGCACGCTTCACGTTGGACGCAATGCCCGGTAAGCAGATGAGTATCGATGCC
GACCTGCGCGGCGGCAACCTGACCGCAGATGAAGCACGCCGCAAACGCGCACGGCTGGCCATGGAAAGCCAACTGCACGG
CGGCATGGACGGCGCCATGAAATTCGTCAAGGGTGATGCGATCGCCGGCCTGGTAATTACCATGGTCAACATCCTGGCCG
GCATCGTGGTCGGCGTGACGTACCACGGCATGACCGCGGGCGAAGCGGCCAACCGCTTTGCGATCCTGTCGGTGGGCGAT
GCCATGGTGTCGCAGATCGCCTCACTGCTGATATCGGTGGCTGCCGGCGTCATGATCACCCGCGTGGCCAACGAGAACGA
GACAAGGCTCAGCTCGCTCGGGCTCGATATCGGCCGTCAGCTCACCAGCAATGCGCGCGCCCTGATGGCAGCGAGCGTGC
TGCTGGCCTGCTTTGCGTTCGTCCCTGGATTCCCGGCCGTGCTGTTCCTGCTGCTGGCAGCGGCCGTCGGCGCCGGCGGC
TATACGATCTGGCGCAAGCAACGCGATATCAGCGGCACCGATCAGCGCAAACTGCCTTCGACGAGCCGTAAAGGCGCCAA
GGGCGAGGCGCCACATATTCGCAAAAACGCCCCTGATTTCGCCTCACCCCTGTCGATGCGTCTGTCGCCGCAGCTGGCCA
ATCTGCTCGACCCCGCGCGGCTTGATCAGGCGATCGAAAGCGAGCGCCGCAAGTTGGTCGAGTTGCTGGGCTTGCCGTTT
CCCGGAATCGCGATATGGCAGAGCGAGTCCCTGCAGGACATGCAATACGAGGTGTTGATTCACGATGTCCCCGAGACACG
CGCCGAATTGGGGGACACCGACGACATGCAAGCGGCGCTGGCCCGCCAGGCCATCGCACCCCTGCACGCGCGCGCGCACC
TGTTCGTCGGCATCCAGGAAACCCAGTGGATGCTGGAGCAGGTGGCTGTGGACTATCCCGGGCTGGTTGCGGAGGTCAAC
AAGGCGATGCCCGCACAACGCATTGCCGATGTGTTGCGGCGTCTGCTGGAAGAAAGGATTCCGGTGCGCAATATCAAGAG
CATTCTGGAGAGTCTGGTGGTATGGGGTCCGAAGGAAAAGGACCTTCTGATGTTGACCGAATATGTGCGCTGCGATCTCA
GCCGTTATCTTGCGCATACCGCAACCGCAGGCACCGGGCAGCTGCCTGCGGTGATGCTCGACCATGCTGTGGAACAAATG
ATCAGGCAATCCATTCGCGCGACCGCGGCCGGCAATTTCCTGGCCCTTCCGCCCGAGCAGGCGAACCAGCTTGTCGAACA
GGTGGAACGCATCGTGGGCGACCAGGCGCAGCATCCGCTGGCGGTGGTCGCATCGATGGACGTACGCCGCTATGTGCGCC
GCATGATCGAAGCACGGCTGACGTGGCTGCAGGTTTATTCGTTCCAGGAACTGGGTTCGGAGGTGCAGTTACAGCCGATC
GGCAGGGTGGTGGTGTGA

Protein sequence : 
MLGDRVRATRYFAYSGEVAIAALVVAVIGLMILPLPTPLIDTLLGINITLSVVLLMVTMYVPDSISLSSFPSLLLFTTLL
RLSLNIASTKSILLHAEAGHIIESFGELVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDA
DLRGGNLTADEARRKRARLAMESQLHGGMDGAMKFVKGDAIAGLVITMVNILAGIVVGVTYHGMTAGEAANRFAILSVGD
AMVSQIASLLISVAAGVMITRVANENETRLSSLGLDIGRQLTSNARALMAASVLLACFAFVPGFPAVLFLLLAAAVGAGG
YTIWRKQRDISGTDQRKLPSTSRKGAKGEAPHIRKNAPDFASPLSMRLSPQLANLLDPARLDQAIESERRKLVELLGLPF
PGIAIWQSESLQDMQYEVLIHDVPETRAELGDTDDMQAALARQAIAPLHARAHLFVGIQETQWMLEQVAVDYPGLVAEVN
KAMPAQRIADVLRRLLEERIPVRNIKSILESLVVWGPKEKDLLMLTEYVRCDLSRYLAHTATAGTGQLPAVMLDHAVEQM
IRQSIRATAAGNFLALPPEQANQLVEQVERIVGDQAQHPLAVVASMDVRRYVRRMIEARLTWLQVYSFQELGSEVQLQPI
GRVVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcV NP_640760.1 HrcV protein Virulence Hrp PAI Protein 0.0 100
hrcV AAP34346.1 HrcV Virulence Hrp PAI Protein 0.0 99
hrcV YP_198723.1 protein HrcV Virulence Hrp PAI Protein 0.0 98
hrcV YP_362156.1 HrcV protein Virulence Hrp PAI Protein 0.0 98
hrcV BAB07859.1 HrcV Virulence Hrp PAI Protein 0.0 98
hrcV NP_636603.1 protein HrcV Virulence Hrp PAI Protein 0.0 95
XC_3013 YP_244081.1 HrcV protein Virulence Hrp PAI Protein 0.0 95
lssD AAO18050.1 LssD Virulence TTSS locus Protein 3e-95 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XAC29_02075 YP_007634908.1 HrcV protein VFG0064 Protein 6e-97 44
XAC29_02075 YP_007634908.1 HrcV protein VFG0384 Protein 8e-94 42
XAC29_02075 YP_007634908.1 HrcV protein VFG0198 Protein 8e-91 42