Gene Information

Name : XAC29_16255 (XAC29_16255)
Accession : YP_007637633.1
Strain : Xanthomonas axonopodis Xac29-1
Genome accession: NC_020800
Putative virulence/resistance : Virulence
Product : ATP-dependent Clp protease subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3761298 - 3763883 bp
Length : 2586 bp
Strand : -
Note : COG0542 ATPases with chaperone activity, ATP-binding subunit

DNA sequence :
ATGCGGATGGACAAGCTCACCTCGCGGTTCCAGCAGGCGCTGGCCGACGCGCAGTCGTTGGCTGTGGGCCGCGACCACAA
CATCATCGAGCCGGTGCACGTGCTGGCCGCGCTGCTCGACCAGAGCGGCGGCAGCACCCGACCGCTGCTGTCGCAGGCCG
GCGTCAACGTGCCGCTGCTGCGCGAGCGCCTCGGCGAGGCGCTGGACACGCTGCCCAAGGTGTCCGGGCAGGAAGGCAAT
CTGTCGATCGGCAACGATCTCAATCGCCTGCTCAACCAGACCGACAAGCTTGCCCAGCAACATGGCGACGCGTTCATCGC
CAGCGAATGGTTCGTGCTGGCCGCCGCCGACGATGCCAGCCCGCTGGGCGTGGCGTTGCGCGCTGCCGGCGGTGACAAGA
AGAAGATCGAAGCGGCCATCGACAAGCTGCGTGGTGGCGAAACCGTGCAGTCGGAAAACGCCGAAGAACAGCGCCAGGCG
CTGGAGAAATACACCATCGATCTGACCGCACGCGCCGAGAGCGGCAAGCTCGATCCGGTGATCGGCCGCGACGAAGAAAT
CCGCCGCACCATCCAGGTGCTGCAGCGCCGCACCAAGAACAACCCGGTGCTGATCGGCGAACCGGGCGTGGGCAAGACCG
CCATCGTCGAGGGCCTGGCCCAGCGCATCATCAACGGCGAAGTGCCCGAAGGCCTGCGCGGCAAGCGCGTGCTGTCGCTG
GACATGGGCGCGCTGATTGCCGGTGCCAAGTTTCGCGGCGAGTTCGAAGAACGCCTGAAGGCGGTGCTCAGCGACCTGTC
CAAGAACGAAGGCCAGATCATCCTGTTCATCGATGAGCTGCACACCATGGTCGGCGCCGGCAAGGCCGACGGCGCGATGG
ATGCCGGCAACATGCTCAAGCCGGCGCTGGCGCGCGGTGAGCTGCATTGCATCGGCGCCACCACGCTGGACGAATACCGC
AAGTACATCGAAAAAGATGCGGCATTGGAGCGCCGCTTCCAGAAAGTGTTCGTGGGCGAGCCGACGGTGGAAGACACCAT
TGCGATCCTGCGTGGGCTGAAGGAGCGCTACGCCGTGCATCACGGCGTGGAGATCACCGACCCGGCCATCGTGGCCGCCG
CGACGTTGTCCAACCGCTACATCACCGACCGCCAGTTGCCGGACAAGGCCATCGATTTGATGGACGAAGCGGCATCGCGC
ATCCGCATGGAGATCGACTCCAAGCCGGAGGAGCTCGATCGCCTGGAGCGCCGCCTGATCCAGCTCAAGATCCAGCGCGA
GATGCTCAAGAAGGAAAAGGACGATGCCTCGCGGCAACGGCTGGCCGATCTGGAAACCGATATCGACAAGCTCGAGCGCG
AGTTCTATGACCTCAACGAGCTGTGGAAATCCGAGAAGGCTGCGCTGCAGGGCACCACCAAGGTCAAGGAGCAGATCGAA
CACGCCAAGCTGGAACTGGAGGCCGCGCAGCGCCGCCAGGACTACGCCAAGATGAGCGAGATCCAGTACGGCGTGCTGCC
GCAGCTGGAAAAGCAGATGGCGTTGGCCAACGAAGTCGAACACCACGATTTCAAGCTGGTGCAGGACCGCGTGACCGCCG
AGGAAATCGCCGAAGTGGTGTCGCGCTGGACCGGCATTCCGGTCAACAAGATGCTCGAAGGCGAGCGCGACAAGCTGTTG
CGCATGGAAGACGAACTGCATCATCGCGTGGTCGGGCAGAACGAGGCGATCAAGGTGGTGTCCGATGCGGTGCGCCGCTC
GCGCGCCGGCCTGTCCGACCCGAACCGCCCCAGTGGCTCGTTCCTGTTCTTAGGTCCCACCGGCGTGGGTAAGACCGAGC
TGTGCAAGGCGCTGGCGGATTTCCTGTTCGACAGCACCGAAGCGATGATTCGCATCGACATGAGCGAGTTCATGGAGAAG
CATTCGGTCGCGCGCCTGATCGGTGCACCTCCTGGCTATGTGGGTTATGAAGAAGGCGGTTATCTCACCGAGGCCGTGCG
TCGTCGTCCGTATTCGCTGATCCTGCTGGACGAAGTGGAAAAGGCGCATCCGGATGTCTTCAACATCCTGCTGCAGGTGC
TCGACGATGGCCGCCTGACCGATGGCCAGGGCCGCACCGTGGACTTCCGCAATACCGTCATCGTGATGACCTCCAACCTG
GGCTCGCACCAGATCCAGGAGCTGTCCGGCGACGATAGCGCCGAGGCGTACACGCAGATGAAGGCCGCGGTGATGGGGGT
GGTGCAGGCCCACTTCCGCCCGGAGTTCATCAACCGGCTGGACGACATCGTGGTGTTCCATCCGCTGGACAAGGCGCAGA
TCAAGTCGATTGCGCGCATCCAGTTGCAAGGCCTGGAAAAACGCCTGGCCGAGCGCGGCCTCAAGCTGGACCTGGACGAT
GCGGCGCTGGAGGTGCTGGGCAGTGTCGGCTTCGACCCGGTGTACGGCGCGCGTCCGCTCAAACGCGCGATCCAATCGCA
GGTGGAGAACCCGCTGGCGCAGCAGATCCTGTCGGGCCAGTATCTCAGCGGCGATAGCGTGCGCGTGCGTGCCGACGGCG
GACGGCTGGTGTTTACCAAGGACTGA

Protein sequence :
MRMDKLTSRFQQALADAQSLAVGRDHNIIEPVHVLAALLDQSGGSTRPLLSQAGVNVPLLRERLGEALDTLPKVSGQEGN
LSIGNDLNRLLNQTDKLAQQHGDAFIASEWFVLAAADDASPLGVALRAAGGDKKKIEAAIDKLRGGETVQSENAEEQRQA
LEKYTIDLTARAESGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLRGKRVLSL
DMGALIAGAKFRGEFEERLKAVLSDLSKNEGQIILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCIGATTLDEYR
KYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKERYAVHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASR
IRMEIDSKPEELDRLERRLIQLKIQREMLKKEKDDASRQRLADLETDIDKLEREFYDLNELWKSEKAALQGTTKVKEQIE
HAKLELEAAQRRQDYAKMSEIQYGVLPQLEKQMALANEVEHHDFKLVQDRVTAEEIAEVVSRWTGIPVNKMLEGERDKLL
RMEDELHHRVVGQNEAIKVVSDAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELCKALADFLFDSTEAMIRIDMSEFMEK
HSVARLIGAPPGYVGYEEGGYLTEAVRRRPYSLILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNL
GSHQIQELSGDDSAEAYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKSIARIQLQGLEKRLAERGLKLDLDD
AALEVLGSVGFDPVYGARPLKRAIQSQVENPLAQQILSGQYLSGDSVRVRADGGRLVFTKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 6e-103 42
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 2e-100 41
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 1e-100 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XAC29_16255 YP_007637633.1 ATP-dependent Clp protease subunit VFG0080 Protein 3e-127 44