Gene Information

Name : XAC29_09725 (XAC29_09725)
Accession : YP_007636375.1
Strain : Xanthomonas axonopodis Xac29-1
Genome accession: NC_020800
Putative virulence/resistance : Unknown
Product : ISXac3 transposase, IS3 family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2258925 - 2259779 bp
Length : 855 bp
Strand : -
Note : COG2801 Transposase and inactivated derivatives

DNA sequence :
ATGCAAGTCCACCGCGAAGAATTCAGGGTGTGCGCGATGTGCCGGGTTTTGCGGGTGAACCGGGCTGGATACTACGCGTG
GCTAAAGTCGCCCGACAGTGAACGCGCCAAGGAAGACGAACGCCTGCTGGGGCTGATCAAGCACCACTGGTTGGCCAGCG
GCAGTGTCTATGGGCATCGCAAGATTGCCAAGGATCTACGCGATCTGGGTGAGCGTTGCAGTCGCCATCGGGTGCATCGA
TTGATGCGCACCGAGGGACTGCGTGCCCAGGTGGGCTATGGCCGCAAGCCGCGCTTCCATGGCGGAACGCCGTGCAAGGC
GGCAGCCAACCTGCTGGATCGACAGTTCGACGTGACCGAGCCGGACACGGCCTGGGCGAGCGACTTCACCTTCATCCGTA
CGCATGAAGGCTGGATGTACCTGGCTGTGGTGATCGATCTGTTTTCCAGGCAGGTCGTCGGCTGGGCGATGCGCGATCGA
GCCGATACCGAGTTGGTCGTGCAGGCCTTGCTGTCGGCGGTGTGGCGGCGCAAACCCAGCGCTGGTTGCCTGGTTCATTC
GGACCAGGGGTCTGTCTACACCAGCGATGACTGGCGCAGTTTCCTGGCGTCCCATGGCTTGGTGTGCAGCATGAGTCGGC
GTGGCAACTGCCATGACAACGCACCGGTGGAGAGCTTCTTTGGTCTGCTCAAACACGAGCGGATCAGGCGGCGGATCTAC
CCCACCAAGGACGCCGCACGCGCCGAGGTGTTCGACTACATCGAGATGTTCTACAACCCACAACGCCGTCATGGTTCAAC
TGGCGACCTGTCCCCTGTAGAGTTTGAACGGCGCTACGCGCAACGAGGGTCTTGA

Protein sequence :
MQVHREEFRVCAMCRVLRVNRAGYYAWLKSPDSERAKEDERLLGLIKHHWLASGSVYGHRKIAKDLRDLGERCSRHRVHR
LMRTEGLRAQVGYGRKPRFHGGTPCKAAANLLDRQFDVTEPDTAWASDFTFIRTHEGWMYLAVVIDLFSRQVVGWAMRDR
ADTELVVQALLSAVWRRKPSAGCLVHSDQGSVYTSDDWRSFLASHGLVCSMSRRGNCHDNAPVESFFGLLKHERIRRRIY
PTKDAARAEVFDYIEMFYNPQRRHGSTGDLSPVEFERRYAQRGS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 1e-39 44
tnpB CAB61574.1 transposase B Not tested HPI Protein 5e-40 44
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 1e-28 43
unnamed AAC31485.1 L0006 Not tested LEE Protein 8e-29 43
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 9e-29 43
unnamed CAI43898.1 putative transposase Not tested LEE Protein 3e-29 43
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 3e-29 43
Z5089 NP_290241.1 transposase Not tested LEE Protein 1e-28 43
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 8e-36 42
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 8e-36 42
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 8e-36 42
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 1e-35 42
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 8e-36 42
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 1e-35 42
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 8e-36 42
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 8e-36 42
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 1e-42 41
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-42 41
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-42 41
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 5e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XAC29_09725 YP_007636375.1 ISXac3 transposase, IS3 family protein VFG0785 Protein 5e-29 43
XAC29_09725 YP_007636375.1 ISXac3 transposase, IS3 family protein VFG1122 Protein 5e-36 42