Gene Information

Name : ETAC_04305 (ETAC_04305)
Accession : YP_007628352.1
Strain : Edwardsiella tarda C07-087
Genome accession: NC_020796
Putative virulence/resistance : Virulence
Product : porcine attaching-effacing associated protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 990772 - 991533 bp
Length : 762 bp
Strand : -
Note : COG4588 Accessory colonization factor AcfC, contains ABC-type periplasmic domain

DNA sequence : 
ATGAAAAAAGTTCTAGCCACGATGATTTTTGCATTTTCTTCAGCCGCATTTGCCGACATTCATTTATATGGACCCGGTGG
CCCCCACGTCGCCTTACAGGCGGCAGCGGCACAGTATACCCAAAAAACTGGGGTACCGATTACCGTACACTACGGCCCTC
AGGCAACGTGGAATGATGCAGCAAAGAAGAATGCGGATATCCTATTTGGTGCCTCAGAGCAATCGGCCTTGGCCATCGTG
CGCGATCATCAGAATAACTTCAGTGAGAAAGATATTGAGCCGCTGTATTTACGGCAGAGCATCCTGCTGGTAAAAAAAGG
AAATCCTAAAAATATCAAGGGAGTTGAAGACCTCTCTCGCCCCGGGATTGGGATTATCGTAAACGATGGCGGTGGTACGA
GTAATACCTCTGGCACGGGTGTATGGGAAGATATCGCGGGGCGTAAAGGGGATATTAAGACCGTTATCGGCATACGGCAA
AATATTATCCTCTTTGCGCCCAATAGCGGGAGCGCCCGTAAGGCTCTGGAAGAGCAGCCTCAAGCCGATGTTTGGATAAC
CTGGGCGGATTGGGCTATCAGTAATCCAGGAATCGGTGATGTCGTTAAGATTGAACCAGACTATATAATATGGCGCGATA
TGAATATTACAGTCCGTAAGGACTCAGATGAAGAAACTCGCCAATTTGCCGCCTGGCTGCGCTCCGATGAAGCCCTTCCG
ATATTTATAAAATACGGTTGGTTGAGATCCGCCGCGTCTTAA

Protein sequence : 
MKKVLATMIFAFSSAAFADIHLYGPGGPHVALQAAAAQYTQKTGVPITVHYGPQATWNDAAKKNADILFGASEQSALAIV
RDHQNNFSEKDIEPLYLRQSILLVKKGNPKNIKGVEDLSRPGIGIIVNDGGGTSNTSGTGVWEDIAGRKGDIKTVIGIRQ
NIILFAPNSGSARKALEEQPQADVWITWADWAISNPGIGDVVKIEPDYIIWRDMNITVRKDSDEETRQFAAWLRSDEALP
IFIKYGWLRSAAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
acfC AAK20768.1 accessory colonization factor AcfC Virulence VPI Protein 6e-57 55
acfC AAK20798.1 accessory colonization factor AcfC Virulence VPI Protein 6e-57 55
acfC AAA82706.1 AcfC Virulence VPI Protein 6e-57 55
VC0841 NP_230489.1 accessory colonization factor AcfC Virulence VPI-1 Protein 8e-57 55
acfC YP_001216322.1 accessory colonization factor AcfC Virulence VPI-1 Protein 8e-57 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETAC_04305 YP_007628352.1 porcine attaching-effacing associated protein VFG0839 Protein 2e-83 74
ETAC_04305 YP_007628352.1 porcine attaching-effacing associated protein VFG0105 Protein 3e-57 55