Gene Information

Name : ETAC_04255 (ETAC_04255)
Accession : YP_007628342.1
Strain : Edwardsiella tarda C07-087
Genome accession: NC_020796
Putative virulence/resistance : Virulence
Product : two component system sensor kinase SsrB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 972597 - 973241 bp
Length : 645 bp
Strand : -
Note : COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

DNA sequence : 
ATGACTATTTCTATTTTGCCTCTGAACATTCTGATCGTTGAAGATCATGCCTTGCTAGCCGATGGCATCCGTAATCTCTT
GGACAGCCAGCCCCGCTACCGGGTCGTGGGCGCCGTCTCGAATGGGCTGGCCGTTTATGAGGCCTGCCAGCGTCTCTCGC
CCGATCTGGTCTTACTCGATCTGGGTCTGCCGGGCATGGACGGCGTTGACGTGATCCGTCAGCTGCGGCGTCGCTGGAGC
GATATGCGTATCGTCGTCGTCACCGCCTCCTCTGAGGCACGGCGCGGCAGCGAAGCCCTCGCCGCCGGCGCGCTCGCCTA
CGTCCTGAAGCAAAGCCCGCAGCAAACCCTGCTGGCGGCCATGCAGCATGCCTCGCTGGGGAAAACCTTTGTCGATCCCG
CCCTCCGGCTGGACTCCCTGGTAGCCTCGTCCGATATGGCTCAGGAGCCGCCGCTGACCCTGCGCGAGCGGCAAATTCTC
AAGCTGGTCGCCGAGGGCAAGCGCAACCGGGATATCGCGGAGCTGCTGTCCATCAGCCTGAAAACCGTGGAGACCCACCG
GCTCAACCTGATGCGCAAGCTGGATGCCCACAACGCGGCGGAGCTGAGCAACTGGGCCCGCCGCCTGGGGGTTCTGGAGT
TTTAA

Protein sequence : 
MTISILPLNILIVEDHALLADGIRNLLDSQPRYRVVGAVSNGLAVYEACQRLSPDLVLLDLGLPGMDGVDVIRQLRRRWS
DMRIVVVTASSEARRGSEALAAGALAYVLKQSPQQTLLAAMQHASLGKTFVDPALRLDSLVASSDMAQEPPLTLRERQIL
KLVAEGKRNRDIAELLSISLKTVETHRLNLMRKLDAHNAAELSNWARRLGVLEF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0255 YP_002345335.1 two-component response regulator Not tested Not named Protein 2e-40 54
ssrB YP_216399.1 secretion system transcriptonal activator Virulence SPI-2 Protein 1e-35 49
ssrB NP_456137.1 putative two-component response regulator Virulence SPI-2 Protein 1e-35 49
ssrB NP_805062.1 two-component response regulator Virulence SPI-2 Protein 1e-35 49
ssrB NP_460356.1 transcriptional activator Virulence SPI-2 Protein 1e-35 49
ssrB CAB09344.1 SsrB Virulence SPI-2 Protein 2e-32 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETAC_04255 YP_007628342.1 two component system sensor kinase SsrB VFG0492 Protein 3e-36 49