Gene Information

Name : ETAC_04240 (ETAC_04240)
Accession : YP_007628339.1
Strain : Edwardsiella tarda C07-087
Genome accession: NC_020796
Putative virulence/resistance : Virulence
Product : secretion system apparatus protein SsaU
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 968152 - 969210 bp
Length : 1059 bp
Strand : +
Note : COG4792 Type III secretory pathway, component EscU

DNA sequence : 
ATGAGCGAGAAAACGGAACAGCCCACGGCGAAGCGTCTGCGCGATGCGCGCGAGGAGGGGCAGGTCGCCAAGAGCCAGGA
TATCAGCGCGACCGTACAGCTGGCGGTCATTCTGCTCTGGATGGTGACGGAGGGGCCGACGCTGTATGCGGCCATCGGGG
GCTTCATCGATGCGACGCTGGCCACGCTGAACCTCCCGTTGCCCGACGCCATCGCGCTGCTGACCGGCAAGGCCGCCGCG
CTGGTGGTTCGCTTTGTCTTCAGTCTGGCCGCGCTGTTGGCCGTGACGCTGATCTTAACCGGGCTGGTGGAGACCGGCTT
TTTGTTTGCGCCAAAGGCCATCATGCCCTCCGCCGAGCGGATCAACCCACTGAATAACGCTAAGCAGATGGTCTCCCTGC
TCAAGCTGTTCGAGCTGGGCAAGATGGTGCTGAAAATCGTGATCCTCGGCCTGACCTTTACCTATTTTATCCGCGGCTAT
GCCGCATCATTCGCTCAGCTGGTGCGCGCCGACGCCGAGGCCGGTCTGTGGGTCACCAGCAAAATGACCCTGTGGATGTG
GGGGATCTTGCTGCTGCTCACGGCGCTGTTCGCCGTCGTCGACTACAGCATGCAGTATCGCCATCTGCGTAAGCAGCTGA
TGATGTCGCATGAGGATATTAAGCAGGAGTTTAAAAACGCGGAGGGGAGCCCGGAGATCAAGCAGCGGCGCCGAGAGCTG
CACCGGGAGATCCAGAGCGGCAGCCTGGCCGATAGCGTCTCCAGCGCTTCGGTGGTGGTGCGCAACCCGACCCACATTGC
CGTTTGCCTGCGCTACTGCGAGGGGGAGACGCCGCTGCCGCAGGTGGTGGAGTATGGGCGCGGGGCGCGGGCGCGGCATA
TCGTGGCGCTGGCGGAGGCGCGGCGCATTCCCGTGGTGGAGAATATTCCGCTGGCGCGTGCGCTGATCGCGACCACCCGC
CCGGGTGATTACGTACCGGAGGCGCTGTTTGTCGCGGTCGCCCAGCTGCTGCGCCTGCTGCGTGACGAGACAGAAGAAGA
GGAGGAGGAGGATGCGTAA

Protein sequence : 
MSEKTEQPTAKRLRDAREEGQVAKSQDISATVQLAVILLWMVTEGPTLYAAIGGFIDATLATLNLPLPDAIALLTGKAAA
LVVRFVFSLAALLAVTLILTGLVETGFLFAPKAIMPSAERINPLNNAKQMVSLLKLFELGKMVLKIVILGLTFTYFIRGY
AASFAQLVRADAEAGLWVTSKMTLWMWGILLLLTALFAVVDYSMQYRHLRKQLMMSHEDIKQEFKNAEGSPEIKQRRREL
HREIQSGSLADSVSSASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRGARARHIVALAEARRIPVVENIPLARALIATTR
PGDYVPEALFVAVAQLLRLLRDETEEEEEEDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaU YP_216430.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 1e-47 43
ssaU CAA68202.1 secretion system apparatus, SsaU Virulence SPI-2 Protein 8e-50 43
ssaU NP_456106.1 putative type III secretion protein Virulence SPI-2 Protein 3e-49 43
ssaU NP_805093.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 3e-49 43
ssaU NP_460387.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 1e-49 43
YPO0273 YP_002345355.1 secretion system apparatus protein SsaU Virulence Not named Protein 2e-54 43
escU CAI43886.1 EscU protein Virulence LEE Protein 2e-52 41
escU YP_003223487.1 T3SS structure protein EscU Virulence LEE Protein 3e-52 41
escU AAC31525.1 L0046 Virulence LEE Protein 3e-51 41
escU ACU09470.1 secretion system apparatus protein SsaU Virulence LEE Protein 3e-51 41
escU AAC38372.1 EscU Virulence LEE Protein 3e-51 41
escU NP_290280.1 secretion system apparatus protein SsaU Virulence LEE Protein 4e-51 41
escU AAK26703.1 EscU Virulence LEE Protein 2e-52 41
ECs4580 NP_312607.1 secretion system apparatus protein SsaU Virulence LEE Protein 4e-51 41
escU AAL57530.1 EscU Virulence LEE Protein 2e-52 41
escU YP_003236100.1 T3SS structure protein EscU Virulence LEE Protein 4e-51 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETAC_04240 YP_007628339.1 secretion system apparatus protein SsaU VFG0522 Protein 5e-50 43
ETAC_04240 YP_007628339.1 secretion system apparatus protein SsaU VFG0718 Protein 2e-51 41
ETAC_04240 YP_007628339.1 secretion system apparatus protein SsaU VFG0824 Protein 2e-51 41