Gene Information

Name : ETAC_04225 (ETAC_04225)
Accession : YP_007628336.1
Strain : Edwardsiella tarda C07-087
Genome accession: NC_020796
Putative virulence/resistance : Virulence
Product : type III secretion system protein YscR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 966438 - 967085 bp
Length : 648 bp
Strand : +
Note : COG4790 Type III secretory pathway, component EscR

DNA sequence : 
ATGTCTCTGACAGAACAACCGGCGGAACTGATCGCGCTTCTGGTTACCCTCTCGCTGTTACCGCTGCTGATCGTAATGGG
TACATCGTTTTTAAAGCTGTCCGTTGTGTTTGCCCTGCTGCGTAATGCGCTGGGAATACAGCAGATCCCCCCGAACATTG
CGCTGTATGGGCTGGCGCTGATCCTGACGCTGTTCATTATGACGCCGGTCGGCACCGCCGTGCAGGCGCGGCTGGCCGAT
GCGCCCGCGGAGGCGCAGACCACGCTGCTGGCGCGGCTGTCCGACAATACGCTCGACCCATACCGTCAGTTTCTGCGCCA
GCACACCTCCGCGACGCAGCTGCACTTCTTTCGCCAGGTGGCGACAAAGAGCTGGCCCGCCTCCGTTCGGGAGCAGATCA
GCGATGACTCGCTGCTATTACTGATGCCGGCGTTTGCCGTCAGCCAGCTGGTGGAGGCGTTTCAGATAGGCCTGCTGCTG
TTTTTGCCCTTTATCGCCATCGATCTCATCGTCTCCAATATCCTGCTGGCCATGGGGATGATGATGGTGTCGCCGATGAC
CATCTCCATGCCGTTCAAGCTGCTGGTCTTTATTCTGGTCGGGGGCTGGGACAAGCTGCTGGGCCAGCTGTTGCTTTCGT
ATCGCTAA

Protein sequence : 
MSLTEQPAELIALLVTLSLLPLLIVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLALILTLFIMTPVGTAVQARLAD
APAEAQTTLLARLSDNTLDPYRQFLRQHTSATQLHFFRQVATKSWPASVREQISDDSLLLLMPAFAVSQLVEAFQIGLLL
FLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVGGWDKLLGQLLLSYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-59 65
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-56 58
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-55 58
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-55 58
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 6e-56 58
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 6e-56 58
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-53 57
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 8e-46 52
escR AAK26700.1 EscR Virulence LEE Protein 5e-46 52
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 8e-46 52
escR AAL57527.1 EscR Virulence LEE Protein 5e-46 52
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 7e-46 52
escR CAC81847.1 EscR protein Virulence LEE II Protein 5e-46 52
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 7e-46 52
escR CAI43889.1 EscR protein Virulence LEE Protein 5e-46 52
escR AAC31528.1 L0049 Virulence LEE Protein 5e-46 52
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 5e-46 52
escR AAC38369.1 EscR Virulence LEE Protein 4e-45 51
unnamed AAL06354.1 EscR Virulence LEE Protein 4e-46 51
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-45 51
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-44 49
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-44 49
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-39 47
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-39 47
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-39 47
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-38 47
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-35 46
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-35 46
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-36 45
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 6e-39 45
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-39 45
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-36 45
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 9e-39 45
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 9e-39 45
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 7e-39 45
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 7e-39 45
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 6e-39 45
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 4e-39 45
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 4e-34 44
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 4e-34 44
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 8e-41 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETAC_04225 YP_007628336.1 type III secretion system protein YscR VFG0519 Protein 2e-56 58
ETAC_04225 YP_007628336.1 type III secretion system protein YscR VFG0188 Protein 2e-52 55
ETAC_04225 YP_007628336.1 type III secretion system protein YscR VFG0394 Protein 7e-52 55
ETAC_04225 YP_007628336.1 type III secretion system protein YscR VFG0044 Protein 1e-46 53
ETAC_04225 YP_007628336.1 type III secretion system protein YscR VFG0827 Protein 2e-46 52
ETAC_04225 YP_007628336.1 type III secretion system protein YscR VFG0715 Protein 2e-45 51
ETAC_04225 YP_007628336.1 type III secretion system protein YscR VFG1012 Protein 3e-36 42
ETAC_04225 YP_007628336.1 type III secretion system protein YscR VFG2338 Protein 1e-28 41
ETAC_04225 YP_007628336.1 type III secretion system protein YscR VFG2494 Protein 5e-31 41