Gene Information

Name : ETAC_02000 (ETAC_02000)
Accession : YP_007627893.1
Strain : Edwardsiella tarda C07-087
Genome accession: NC_020796
Putative virulence/resistance : Virulence
Product : Two-component system response regulator QseB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 470369 - 471028 bp
Length : 660 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGCGTACTGTTAATTGAAGACGATCGCCTGATTGGCGACGGTATTAAAGCCGGATTGAGTAAGATGGGATTTACCTT
GGACTGGTTTACCGACGGGCAGCTAGGCATGACGGCGCTGGAGAGCGCGCCCTATGACGCCGTGATCCTCGACCTGAGCC
TGCCGGGCATCGACGGGCTGGAAATTCTGCGCCGCTGGCGCGAAGCCGGGCACGCGGAGCCGGTTCTGATCCTGACCGCC
CGCGATGCCCTGGAGCAGCGAGTGACCGGGCTACAGCAGGGCGCAGATGACTATCTGTGTAAGCCCTTCGCCCTGATCGA
GGTCGCCGCACGCCTGCAGGCGCTGATCCGGCGCAACCACGGCCAGGCCCAGACCCTGCTCAGCCACGGCGCGGTGAGCC
TCGATCCCCTGAGCCTCACCGCGACCCTCGACGGTGCATCGCTGCCGCTAAAGCCCAAGGAGTTCGCCCTGCTGGAGCTG
CTGCTGCGCAACGCCGGGCGCGTGCTGCCGCGCTCGCTGATCGAGGAAAAGCTCTACAGCTGGGATGACGATGTCTCCAG
CAACGCCGTCGAGGTCCACATCCACCACCTGCGCCGCAAGCTGGGCAGCCACTTTATCCGCACCGTGCACGGCGTCGGCT
ACACGCTGGGAGACGCCTGA

Protein sequence : 
MRVLLIEDDRLIGDGIKAGLSKMGFTLDWFTDGQLGMTALESAPYDAVILDLSLPGIDGLEILRRWREAGHAEPVLILTA
RDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNHGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLEL
LLRNAGRVLPRSLIEEKLYSWDDDVSSNAVEVHIHHLRRKLGSHFIRTVHGVGYTLGDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-41 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETAC_02000 YP_007627893.1 Two-component system response regulator QseB BAC0487 Protein 3e-41 47
ETAC_02000 YP_007627893.1 Two-component system response regulator QseB BAC0083 Protein 1e-35 44
ETAC_02000 YP_007627893.1 Two-component system response regulator QseB BAC0638 Protein 2e-29 43
ETAC_02000 YP_007627893.1 Two-component system response regulator QseB BAC0197 Protein 3e-36 42
ETAC_02000 YP_007627893.1 Two-component system response regulator QseB BAC0308 Protein 2e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETAC_02000 YP_007627893.1 Two-component system response regulator QseB VFG0473 Protein 1e-39 45
ETAC_02000 YP_007627893.1 Two-component system response regulator QseB VFG1390 Protein 4e-33 41