Gene Information

Name : ETAC_12110 (ETAC_12110)
Accession : YP_007629903.1
Strain : Edwardsiella tarda C07-087
Genome accession: NC_020796
Putative virulence/resistance : Resistance
Product : putative AraC-family transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2729705 - 2730073 bp
Length : 369 bp
Strand : +
Note : COG2207 AraC-type DNA-binding domain-containing proteins

DNA sequence : 
ATGACAACCCAGGGACAGCACCAGCTGTTGGTCGACGCATTAATTCAGTGGATAGAGCAGAATCTGGACAAGCGTATTCT
GATCGACGATATCGCCGAACGGGCGGGTTATTCCAAATGGTATCTGCAGCGCCTGTTTAAAGAGGTCACCGGCTACAGCC
TGGCCGCCTATGTGCGCAAACGCCGCCTGATCCGGGCGGCGGCGGAGCTGCAGCGCAGCAATAAGAAGATTATGGAGATC
ACGCTGCAGTACGGCTTTGATAGCCAGCAGACCTTCAGCCGGGCCTTTAAGCGCCGCTACGGCACCTCGCCCGGCAGCTA
TCGCCAGCAAACGGACGGCGAGCACCGCGTTGCGCTATCGCTCGCCTAA

Protein sequence : 
MTTQGQHQLLVDALIQWIEQNLDKRILIDDIAERAGYSKWYLQRLFKEVTGYSLAAYVRKRRLIRAAAELQRSNKKIMEI
TLQYGFDSQQTFSRAFKRRYGTSPGSYRQQTDGEHRVALSLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 1e-25 52
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 1e-25 52
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 2e-24 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETAC_12110 YP_007629903.1 putative AraC-family transcriptional regulator NC_010558.1.6276025. Protein 6e-26 52
ETAC_12110 YP_007629903.1 putative AraC-family transcriptional regulator CP001138.1.gene612.p Protein 2e-24 50
ETAC_12110 YP_007629903.1 putative AraC-family transcriptional regulator CP000034.1.gene4505. Protein 2e-24 46
ETAC_12110 YP_007629903.1 putative AraC-family transcriptional regulator NC_002695.1.914293.p Protein 1e-24 46
ETAC_12110 YP_007629903.1 putative AraC-family transcriptional regulator CP001138.1.gene4488. Protein 6e-25 46
ETAC_12110 YP_007629903.1 putative AraC-family transcriptional regulator BAC0371 Protein 1e-24 46
ETAC_12110 YP_007629903.1 putative AraC-family transcriptional regulator CP001918.1.gene327.p Protein 2e-24 44
ETAC_12110 YP_007629903.1 putative AraC-family transcriptional regulator CP000647.1.gene4499. Protein 2e-24 43
ETAC_12110 YP_007629903.1 putative AraC-family transcriptional regulator CP000647.1.gene1624. Protein 1e-21 41
ETAC_12110 YP_007629903.1 putative AraC-family transcriptional regulator CP001918.1.gene2033. Protein 3e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETAC_12110 YP_007629903.1 putative AraC-family transcriptional regulator VFG1038 Protein 5e-26 52
ETAC_12110 YP_007629903.1 putative AraC-family transcriptional regulator VFG0585 Protein 6e-25 46