Gene Information

Name : ETAC_10980 (ETAC_10980)
Accession : YP_007629677.1
Strain : Edwardsiella tarda C07-087
Genome accession: NC_020796
Putative virulence/resistance : Resistance
Product : AraC family transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2491905 - 2492258 bp
Length : 354 bp
Strand : +
Note : COG2207 AraC-type DNA-binding domain-containing proteins

DNA sequence : 
ATGTACAATACCGATTTTATCAGCGCACTGCGCACCTGGATCGACAGCAACGTTGCCGCTATCTCATCCCTTGACGACGT
GGCGGCACGCGCCGGTTACTCCAAATGGCACCTGCAGCGCATGTTCAAAGCGCACACCGGCGTTCGGCTGGGGGAGTATA
TCCGCAATAAAAAGCTGGATGAATCGGCCCGTCGGCTAAAAGTCTGCCAGGGTTCGATTCTCGACATCGCCCTGTCGATG
GGCTTTGACTCCCAACGCTCCTTTACCCGCTCTTTCAAGCGGCGCTTTGACGTGACGCCGGGCGTATGGAAGAAAGAGGT
GACGGCGGGAAAACCGCTGGATCGCGCCGCCTGA

Protein sequence : 
MYNTDFISALRTWIDSNVAAISSLDDVAARAGYSKWHLQRMFKAHTGVRLGEYIRNKKLDESARRLKVCQGSILDIALSM
GFDSQRSFTRSFKRRFDVTPGVWKKEVTAGKPLDRAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 2e-19 46
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 2e-19 46
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 2e-18 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETAC_10980 YP_007629677.1 AraC family transcriptional regulator CP000647.1.gene1624. Protein 1e-21 52
ETAC_10980 YP_007629677.1 AraC family transcriptional regulator CP001138.1.gene1637. Protein 4e-21 50
ETAC_10980 YP_007629677.1 AraC family transcriptional regulator CP000034.1.gene1596. Protein 3e-21 50
ETAC_10980 YP_007629677.1 AraC family transcriptional regulator CP001918.1.gene2033. Protein 3e-21 47
ETAC_10980 YP_007629677.1 AraC family transcriptional regulator CP001138.1.gene612.p Protein 2e-20 46
ETAC_10980 YP_007629677.1 AraC family transcriptional regulator BAC0560 Protein 4e-21 46
ETAC_10980 YP_007629677.1 AraC family transcriptional regulator NC_002695.1.917339.p Protein 4e-21 46
ETAC_10980 YP_007629677.1 AraC family transcriptional regulator NC_010558.1.6276025. Protein 9e-20 46
ETAC_10980 YP_007629677.1 AraC family transcriptional regulator CP001138.1.gene4488. Protein 5e-19 44
ETAC_10980 YP_007629677.1 AraC family transcriptional regulator BAC0371 Protein 4e-19 43
ETAC_10980 YP_007629677.1 AraC family transcriptional regulator NC_002695.1.914293.p Protein 4e-19 43
ETAC_10980 YP_007629677.1 AraC family transcriptional regulator CP000647.1.gene4499. Protein 5e-20 42
ETAC_10980 YP_007629677.1 AraC family transcriptional regulator CP000034.1.gene4505. Protein 1e-18 42
ETAC_10980 YP_007629677.1 AraC family transcriptional regulator CP001918.1.gene327.p Protein 2e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETAC_10980 YP_007629677.1 AraC family transcriptional regulator VFG1038 Protein 8e-20 46
ETAC_10980 YP_007629677.1 AraC family transcriptional regulator VFG0585 Protein 5e-19 44