|
Name : ETAC_10680 (ETAC_10680) Accession : YP_007629617.1 Strain : Edwardsiella tarda C07-087 Genome accession: NC_020796 Putative virulence/resistance : Virulence Product : P pilus assembly protein, porin PapC Function : - COG functional category : - COG ID : - EC number : - Position : 2420107 - 2422656 bp Length : 2550 bp Strand : - Note : COG3188 P pilus assembly protein, porin PapC DNA sequence : ATGATGAAAAATAATAAGCAGTTCACGATTAGTAAAATTGCGTTATCAGTTTTGCTTTCACTTTTGGCAGGAAGCGTTTA CGCCGTGGATTTTAATACTGATGTATTAGATGCGGCAGATAAGAAAAATATTGATTTTTCTAGATTTTCTCAAGCCGGAT ACATCATGCCTGGGCAGTATCAGATGCAGGTTATGGTTAACGGACAAGCGATTAGCCCTTCATCTTTGCCAGTCTCTTTT TTGGATCAAACAGATCCGGAGAAGGGGAGCGGAAAACAGGCTTTACCTCAGGCCTGCCTTACACCACCGATGGTGGCATT GATAGGGCTGACTGCCTCTTCTCTTGAGAAAGTGACTTACCGGAATGATGGTAAGTGCGCGGATTTAAGTGCGCTGAAAG GTGTTACGCTCCGCCCGGATTTATCCAATGGTATCTTGGCGATTAATATGCCTCAGGCTTGGATGGAGTACTCAGATGCC TCTTGGCTGCCGCCATCTCGTTGGGATAACGGGATTCCCGGTTTATTACTGGATTATAATATTAATGCGACGGTCAATAG TCCTCATCAGGGGCAACAATCTCAGTCAGTCAACTACAATGGTACCGTGGGTGCGAACGTCGGATCGTGGCGTATGCGCG CTGACTATCAGGGCGCAGTGAATCATCTTTCACGCAGTACTCAGGGCAGCGATACCCGGTTCGATTGGAACCGTTTCTAT ATGTATCGGGCGATTCCGCGTTGGCGCGCCAAGTTGACAGTGGGTGAGAATTATACCAATTCAGATATCTTTAATGCCTG GCGCTATCTTGGCACTAGTCTGGAGAGCGACGATCGCATGCTGCCGCCGAAATTGCGTGGCTATGCGCCGCAGATTTCTG GTATCGCTGATACCAATGCCCGGGTAGTTGTATCCCAGCAAGGACGTATTTTGTATGATTCCACGGTTCCTGCTGGTCCG TTTACTATTCAGGATTTAGACAGCTCGGTACGTGGGCGTTTAAATGTAGAGATTATTGAGCAGAATGGTCAGAGGAAAAC ATTTCAGGTTGATACGGCGTCTGTACCTTATCTGACGCGTCCAGGACAAATTCGCTATAAGCTATTTTCAGGTCGCTCTC GCAATGGTAGTCATACAACGGAAGGCCCACTTTTTATGGCTGGAGAGGCCTCATGGGGGATCAATAATACCTGGTCACTC TATGGCGGGGCGGTGGCTGCCGGAGAATATAATGCGTTGGCAGTGGGTGCTGGCCGTGATTTATACCAGCTTGGCACTAT CGCTGTGGATGTTACACAATCCGTGGCCAGACTGCCAGGGGTGGGTTCTAAGCAAGGGAAGTCTTGGCGCCTGAGCTACT CTAAACGCTTTGATGAGGCTAATGCAGATATTACATTTGCCGGATATCGTTTCTCCGAGCGAAATTATATGACGATGGAG CAATATCTTGATGCCCGCTATAGAAATAATTTGCGAGGCCGAGAGAAAGAGCTATATACCGTCTCTTTGAATAAGTCATT TGATGATTGGAATACCTCCATTGGAATTCAATACAGCTACCAAACATATTGGGATCAACGCTCGTCAGATAATTACTCGG TATCTGTGAATAATTATTTTGATATCTTTGGATTTAAAAATATATCTGCTGGAATTTCTGCATCACGAGCTAGGTACTCA CGGAATAACGATATTCCTGGAGCCAATGATTCTTATAATGACTCTATTTTTATGCGTCTTTCTATTCCATGGAGTAACGG TACTGTAAGCTATAGCGGTAATATGAGTGCAGGTCGATATACTCAGACCGCTGGTTATAGTGACACTCTCAATGGTGGGT TGGACAGTTACAACGTTAGTGCCGGTGTGAGCACTGGGGATAGTCAGGGAACTCAGGGGCAGCTAAGTGGGTATTATAAT CATAGCAGTCCGCTGGCTAATTTATCTGCTAACTTCTCGACGCTACAGCGTGGATATACTTCATTTGGGTTAAATGCTTC AGGCGGTGCGACATTGACGACTAAAGGGGTGGCGCTACATGCCGGAGGTGTTAATGGAGGAACCCGATTGTTAGTAGATA CCGATGGTATTGGTGGGGTACCTATAGACGGCGGAAGAGTGTTTACAAACCGCTGGGGGGTTGGGGTGGTTACGGATATT AATAGCTATTACCGAAATACGACTTCTGTTGACTTGAATAAGTTGCCGGATGATATGGAGGCAACACGCTCAGTTGTTGA ATCGGTATTGACGGAGGGCGCAATTGGTTACCGTAAGTTTGAGGTTCTAAAAGGTGCTCGTTTATTTGTTGTATTGCGTT TGGCTGATAATTCCGTACCACCTTTTGGCGCCAGTGTAACTAATGCAAAAGGGCGTGAACTCGGTATGGTCGGCGATGCT GGTTTGGCATGGCTAAGCGGCGTTGTCGCTGGAGAGAAAATAAATATTGGATGGGGGGAGCAGGTTCACTGTGTTAGTCA TGTCCCTGACAACCTTAAGTCTGAGCAACAATTACTGTTGCCTTGTCGTGTGCCGAGTGAAATAAAATAA Protein sequence : MMKNNKQFTISKIALSVLLSLLAGSVYAVDFNTDVLDAADKKNIDFSRFSQAGYIMPGQYQMQVMVNGQAISPSSLPVSF LDQTDPEKGSGKQALPQACLTPPMVALIGLTASSLEKVTYRNDGKCADLSALKGVTLRPDLSNGILAINMPQAWMEYSDA SWLPPSRWDNGIPGLLLDYNINATVNSPHQGQQSQSVNYNGTVGANVGSWRMRADYQGAVNHLSRSTQGSDTRFDWNRFY MYRAIPRWRAKLTVGENYTNSDIFNAWRYLGTSLESDDRMLPPKLRGYAPQISGIADTNARVVVSQQGRILYDSTVPAGP FTIQDLDSSVRGRLNVEIIEQNGQRKTFQVDTASVPYLTRPGQIRYKLFSGRSRNGSHTTEGPLFMAGEASWGINNTWSL YGGAVAAGEYNALAVGAGRDLYQLGTIAVDVTQSVARLPGVGSKQGKSWRLSYSKRFDEANADITFAGYRFSERNYMTME QYLDARYRNNLRGREKELYTVSLNKSFDDWNTSIGIQYSYQTYWDQRSSDNYSVSVNNYFDIFGFKNISAGISASRARYS RNNDIPGANDSYNDSIFMRLSIPWSNGTVSYSGNMSAGRYTQTAGYSDTLNGGLDSYNVSAGVSTGDSQGTQGQLSGYYN HSSPLANLSANFSTLQRGYTSFGLNASGGATLTTKGVALHAGGVNGGTRLLVDTDGIGGVPIDGGRVFTNRWGVGVVTDI NSYYRNTTSVDLNKLPDDMEATRSVVESVLTEGAIGYRKFEVLKGARLFVVLRLADNSVPPFGASVTNAKGRELGMVGDA GLAWLSGVVAGEKINIGWGEQVHCVSHVPDNLKSEQQLLLPCRVPSEIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 0.0 | 72 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 0.0 | 67 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 0.0 | 67 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 0.0 | 67 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 0.0 | 67 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 0.0 | 67 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 0.0 | 67 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ETAC_10680 | YP_007629617.1 | P pilus assembly protein, porin PapC | VFG1548 | Protein | 0.0 | 67 |
| ETAC_10680 | YP_007629617.1 | P pilus assembly protein, porin PapC | VFG0884 | Protein | 0.0 | 67 |
| ETAC_10680 | YP_007629617.1 | P pilus assembly protein, porin PapC | VFG0895 | Protein | 0.0 | 67 |
