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Name : G432_08520 (G432_08520) Accession : YP_007616025.1 Strain : Sphingomonas sp. MM-1 Genome accession: NC_020561 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : - COG ID : - EC number : - Position : 1753872 - 1757054 bp Length : 3183 bp Strand : + Note : COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases DNA sequence : ATGGCCTTTTTGTCCGAAGCCCAAGTCGAACAAACCTTGCTAGAGCAACTGCGCGGGCTGGGCTACGTGGTTGCATCTGA TGAGGTCATCAGCCCTGACGGCAGCGCGCCAGAACGCGAAAGCCACGATGTCGTATTGCTGCATCAGCGGCTGGCAGATG CCGTTCTGCGGCTCAACCCGCACCTGCCGCTGGAGGCGCGGGCGGATGCCATTCGCAAGCTCACCCAATCCGTATTCCCC GGTTTGCTGGAAGAAAACCGTCGCATCCACACACTGCTGACCGAGGGCGTGGACGTGGAATACTACGGCGATGATGGGGT ACTGACGGCAGGCAAGGTGGCGTTGCTGGATTTCGACTCGCCTGCGCACAACGACTGGCTGGCCGTGCAGCAGTTCGTGG TCATCCACGGCCAGGTCAAGCGCAGGCCGGACGTAGTGCTGTTCGTCAACGGTTTACCGCTTGCAGTGATCGAGCTGAAG GCGCCAGGTAGCGCAGGCGCGCATCTGGCGGGTGCATTTAACCAGTTGCAGACTTACAAGCAGCAGATTCCGGCGCTGTT TCACACCAACGCGCTGCTGGTCACTTCTGATGGCATCGCGGCGCGCGTGGGGTCGCTGTCCGCCGATCTGGAACGGTTCA TGCCGTGGCGCACCACGGATGGCAGGGCTATTCTGGAAAAAGGCTCGCCGGAACTTCCGACGCTAATCGAGGGCGTATTC GAGAAGCAGCGGTTCCTCGATCTGCTGCGCCATTTCACCGTGTTCGGCGAGACCGGCAGCGGCTTGGCGAAGATCGTGGC GGGCTATCACCAGTACCACGCAGTCAACCGCGCCATCGAGTCCACGATTCGCGCTTCCGACTCATGGCACGGCGTAGCCG AGGAACCAGCGTCTTACGGGCTACCCAGCGTGGCGACGCAATCCCTGGGCGACAGACGCGCGGGGGTGATCTGGCATACG CAAGGTTCCGGCAAGAGTTTGCTGATGGCCTTCTACGCCGGGCGACTGGTGAAACACCCAGCGATGGAGAACCCGACGCT TGTCGTGCTTACCGATCGCAATGACCTAGACGATCAGTTGTTCGCCACCTTCTCGATGTGCCGTGACTTGATCCGCCAGA CACCGGTGCAGGCCGAAAGCCGCGAGCATTTACAGCAATTGCTTGCCAGAGCTTCGGGTGGCGTGATCTTCACCACCTTG CAGAAATTTGGAGAGGTAAACGCGCCGCTGACTACACGCCGCAACGTAGTGGTCATTGCTGATGAAGCGCACCGTTCGCA ATACGGCTTTCGTGCCAAAGTGGATGCCAAGACTGGCGAGGTCTCCTACGGATTCGCCAAATACTTGCGCGACGCGCTGC CCAATGCCTCTTTCATCGGTTTCACGGGTACGCCTATCGAGGCGACGGACGTGAACACTCCGGCCGTGTTCGGTAATTAC ATTGATATCTACGACATCAGCCGCGCGGTGGAGGACGGCGCGACGGTGCCGATCTACTACGAATCGCGTCTGGCGCGCAT TGAACTGGACGAGGACGAGAAGCCTAAGCTCGATGCTGAGGTGGAAGCGCTGACTGAGGACGAGGCGGTTACCGAACAGG AAAAGCTGAAGGCGAAATGGGCGACAGTCGAACAACTGGTCGGTAGCGAAAAACGCGTCGCGCTGGTGGCGAAGGACTTG GTGGCGCACTTCGAGGATAGGCTATCCGCGCTGGATGGCAAGGCGATGGTGGTGTGCATGAGCCGCCGCATCTGCGTGGC GCTGTATGACGAGATCGTCAAGTTGCGCCCGGACTGGCACAGCACCGATGACAATGCCGGAGCCATCAAAATCGTGATGA CGGGCGCAGCCAGCGACCCACCCGAATGGCAGCAGCATATCGGCAACAAGGCGCGACGCGACCTGCTCGCCAAGCGCGCC CGCGACGCCAAAGATCCGCTCAAGTTGGTCATCGTGCGCGATATGTGGCTGACCGGCTTCGACGCGCCGTGCATGCACAC GATGTACGTGGACAAGCCGATGCAGGGACACGGGCTGATGCAGGCCATTGCCCGCGTCAACCGTGTGTTCCGCGACAAGC CTGCTGGCCTGATCGTGGACTATATCGGCATTGCTCAGAGCTTGAAGTCGGCGCTGGCGCAGTATTCGGCGCGCGACCAG GAAGCAACTGGCGTCGATGAAGCGCAGGCTGTGGCCGTGCTGTTGGAGAAGTACGAAGTGGTGCGTGACATGTACCACGG CTTCGATTACGTCACGGCATTGAACGGCACTCCGCAGCAACGACTGGCGATGATGGCCGGAGCCATCGAGTGGATTCTCG ACAGGCAACAACAATGGACAGCGGCGGAGACCACCGAGGAAGGGAAGAAGAACGCTCAGCGGCGTTATCAGGACTCGGTG CTGGCCTTATCGAAGGCGTATTCGCTGGCGTCGGCCTCTGACGAGGCGCGCGGCATCCGCGAGGAAGTCGGCTTCTTCCA AGCTATTCGCGCCGCGCTGGTCAAGTCAAGCACTGGCTCCGGCGTGACCTCGCAGGAGCGCGACTTCGCCATCCAACAGA TCGTCAGCCGTGCGGTGGTCAGCACCGAGATCGTGGACATCCTGAAAGCGGCAGGCATCCAGTCGCCGGACATTTCCATC CTGTCCGACGAGTTTCTTGCCGAAGTGCAGCAGATGCAGAAGAAGAACCTTGCGCTGGAAGCCCTGCGCAAGCTCATCAA CGATGGCATCCGTTCGCGCAGCAAGGCCAACATCGTCGAAACGCGGACGTTCTCGGAACGGTTGGAGCAGGCCGTCGCGC GTTATCACGCTAACGCCATCACTACTGCCGAGGTGTTGCAGCAGCTCATCCAGTTGGCGAAGGACATTCGAGCGGCGCGA CAGCGTGGGGAGGAGTCCGGCCTCAGTGACGAAGAAATTGCCTTTTATGACGCGCTGGCTGAAAACGAATCGGCAGTGCA AATAATTGGCGATGACAATCTCAAGGTGATCGCCCATGAATTGCTGGTCAGTCTGAAAAGCAATGTCTCGGTTGACTGGG CACATCGCGATTCGGCGCGTGCCCGGATGCGCGTGCTGGTCAAGCGTATCCTGCGCAAGTACGGCTATCCGCCTGATTTG CAGGACGCCGCCGTCCAGACAGTGTTGCAGCAGGCGGAAGCACTGTCAGCCGGGTGGGCTTAA Protein sequence : MAFLSEAQVEQTLLEQLRGLGYVVASDEVISPDGSAPERESHDVVLLHQRLADAVLRLNPHLPLEARADAIRKLTQSVFP GLLEENRRIHTLLTEGVDVEYYGDDGVLTAGKVALLDFDSPAHNDWLAVQQFVVIHGQVKRRPDVVLFVNGLPLAVIELK APGSAGAHLAGAFNQLQTYKQQIPALFHTNALLVTSDGIAARVGSLSADLERFMPWRTTDGRAILEKGSPELPTLIEGVF EKQRFLDLLRHFTVFGETGSGLAKIVAGYHQYHAVNRAIESTIRASDSWHGVAEEPASYGLPSVATQSLGDRRAGVIWHT QGSGKSLLMAFYAGRLVKHPAMENPTLVVLTDRNDLDDQLFATFSMCRDLIRQTPVQAESREHLQQLLARASGGVIFTTL QKFGEVNAPLTTRRNVVVIADEAHRSQYGFRAKVDAKTGEVSYGFAKYLRDALPNASFIGFTGTPIEATDVNTPAVFGNY IDIYDISRAVEDGATVPIYYESRLARIELDEDEKPKLDAEVEALTEDEAVTEQEKLKAKWATVEQLVGSEKRVALVAKDL VAHFEDRLSALDGKAMVVCMSRRICVALYDEIVKLRPDWHSTDDNAGAIKIVMTGAASDPPEWQQHIGNKARRDLLAKRA RDAKDPLKLVIVRDMWLTGFDAPCMHTMYVDKPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQSLKSALAQYSARDQ EATGVDEAQAVAVLLEKYEVVRDMYHGFDYVTALNGTPQQRLAMMAGAIEWILDRQQQWTAAETTEEGKKNAQRRYQDSV LALSKAYSLASASDEARGIREEVGFFQAIRAALVKSSTGSGVTSQERDFAIQQIVSRAVVSTEIVDILKAAGIQSPDISI LSDEFLAEVQQMQKKNLALEALRKLINDGIRSRSKANIVETRTFSERLEQAVARYHANAITTAEVLQQLIQLAKDIRAAR QRGEESGLSDEEIAFYDALAENESAVQIIGDDNLKVIAHELLVSLKSNVSVDWAHRDSARARMRVLVKRILRKYGYPPDL QDAAVQTVLQQAEALSAGWA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 48 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 47 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 47 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 47 |
