Gene Information

Name : SM2011_b20297 (SM2011_b20297)
Accession : YP_007613032.1
Strain :
Genome accession: NC_020560
Putative virulence/resistance : Virulence
Product : Putative TRAP-type dicarboxylate transporter,large permease component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 303471 - 304751 bp
Length : 1281 bp
Strand : +
Note : corresponds to SMb20297

DNA sequence : 
ATGGCGACGCTCTTCGGGGGATGGTTTGCCCTTCTGATCGCCGGCATGCCGGTCGGATTCACGCTGATCGTGGCTGCGCT
CGCCTACATGCTCTGGCAGGGGACGGGCCTGAACTTTGCCGGCCAGCGCATGATCGCCGGCCTCAACAGCTTTCCGCTGC
TTGCGGTCCCCTTTTTCATCCTCACCGCACAATTGATGAATCTCTCGGGCGTGACCGAGCGCATTTTCGACTTCGCCAAG
GCGCTTGTCGGCCATATCAGGGGCGGGCTCGGCCATGTGAACATCATGGCGAGCGTGCTGTTTTCCGGCATGTCCGGCTC
GGCCGTCGCCGATGCCGCCGGCCTTGGTCAGCTTGAGATCAAGGCCATGCGCGACGCCGGCTATGACGAGCAGTTTTCCG
GTTCGATCACCGCCGCATCGGCAATCATAGGCCCGCTCATCCCGCCTTCCATTCCCCTCGTTGTCTATGGCGTGATCGCC
AATACCTCGATCGGAGGCCTTTTCCTCGGCGGGATCGTACCGGGACTTCTTTGCGCGGCCTCGCTCATGATCATGGTCTA
CGTGATCGCCTGGCGCCGCAACTATGCGACCGCGCAGCGCGCCGGCTTTCGCCGGGTGTGGTCCACCTTCTGGCACGCGC
TGCTTCCGCTCATCACGCCCTTCATCATCATCGGCGGCATCTTTGCGGGGGTGTTCTCGCCGACCGAGGCTGCGGTGGTC
GCGGCCAGCTATGCGCTGTTCCTCGGTGTCGTCGTCTACCGTGAAATCACCTTCGCCAAACTCGTGACCGTACTGCGCGA
GACTGTCAGCCATACGGCCGCCGTCGGCCTTCTCATCATGGGCGTGTCGCTATTCGGCTATGTGATCGCGCGAGAGCAGG
TACCCCAGCACGTCGCCACGTTCTTTCTCACATATGCGGAAGACCCGCTGACATTCCTGATCCTCGTCAATCTCATGCTG
CTTGCGCTCGGGACCTTTATCGAGGCCCTGGCAATCCTGCTGCTCATCGTACCGGTGCTGGTCCCGACCGCGCTCCAATT
CGGTGTGGATCCCGTCCACTTCGGCGTCATGGTCGTGTTCAACCTGATGATCGGCATTTTGACGCCGCCCATGGGCGTGG
CGCTCTTCGTCGTGTCCAAGGTCGCCGACATTCCCTTCGGCGTGCTCGCACGCGGTATCCTGCCTCTTCTCATTCCGCTC
GTCGTCGTCCTGGTGCTGATCACCATCTTTCCGGCGCTCGTCACCTTCATCCCCGACCAGATGCTCGGAGCCGCCCGATG
A

Protein sequence : 
MATLFGGWFALLIAGMPVGFTLIVAALAYMLWQGTGLNFAGQRMIAGLNSFPLLAVPFFILTAQLMNLSGVTERIFDFAK
ALVGHIRGGLGHVNIMASVLFSGMSGSAVADAAGLGQLEIKAMRDAGYDEQFSGSITAASAIIGPLIPPSIPLVVYGVIA
NTSIGGLFLGGIVPGLLCAASLMIMVYVIAWRRNYATAQRAGFRRVWSTFWHALLPLITPFIIIGGIFAGVFSPTEAAVV
AASYALFLGVVVYREITFAKLVTVLRETVSHTAAVGLLIMGVSLFGYVIAREQVPQHVATFFLTYAEDPLTFLILVNLML
LALGTFIEALAILLLIVPVLVPTALQFGVDPVHFGVMVVFNLMIGILTPPMGVALFVVSKVADIPFGVLARGILPLLIPL
VVVLVLITIFPALVTFIPDQMLGAAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 6e-92 62
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 6e-92 62
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 4e-92 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SM2011_b20297 YP_007613032.1 Putative TRAP-type dicarboxylate transporter,large permease component VFG1110 Protein 2e-92 62