|
Name : HCBAA847_2281 (HCBAA847_2281) Accession : YP_007602127.1 Strain : Helicobacter cinaedi ATCC BAA-847 Genome accession: NC_020555 Putative virulence/resistance : Unknown Product : type I restriction-modification system Function : - COG functional category : - COG ID : - EC number : - Position : 2150611 - 2152113 bp Length : 1503 bp Strand : - Note : similiar to HCCG_00683 of H. cinaedi CCUC18818 DNA sequence : ATGGCAAAAGTCAAACAAACACAAAAGCTAGAAGCCGCCCTTTTTAGTGCCGCTGATAAACTTAGAAAAAACATAGACGC CGCAGAGTATAAACATATCGTGCTTGGACTTGTGTTTTTAAAATACATTAGCGATAGTTTTGAATCTTTACATAAAGAGT TGCTTTCACAGAATGAAGATGCAGAAGACAAGGACGAATATATCGCAAAGAATATCTTTTTTGTGCCACAAGATTCTAGA TGGAGCACTCTTTTAAGCAAAGCAAAAAGCCCACAAATTGGCAAAGATTTAGACTACGCCCTAGACTTGATAGAAAAGGA TAATCCGCAGTTAAAAGGTGTGCTGCCTAAAGTCTATGCTAAAGATAACCTAGATAGTGCGACTTTGGGCGATTTGATAA ACTTAATAGATTCTATCTCACTAAATCAAGAAAATACAAGCGATATTTTAGGGCATATTTTTGAATACTTTTTAGGTGAG TTTGCCTTGAGTGAGGGCAAAAAAGGCGGGCAATTCTACACGCCAAAAAGCGTTGTAGAGCTATTAGTAGCTATGCTAGA GCCTTATAATGGCAGAGTGTTTGATCCTTGCTGTGGAAGCGGGGGAATGTTTGTCCAAAGTGAGCGATTTGTGCGAGAGC ATCAGGGTAAAATCAGCGATATTTCAATCTATGGGCAAGAGAGTAATCAAACCACTTGGCGACTAGCAAAGATGAATCTT GCCTTGCGAAAAATAGATTCTAGCTCACTCAAATGGAATAGTGAAGGAAGCTTTCTCAATGACGCACACAAGGATTTAAA GGCAGATTTCATCATCGCAAACCCACCTTTTAACGCCACAGATTGGGGCAGTGAAGCACTAGAAAATGATGTGCGTTGGC AGTATGGCACACCCCCTAGCACAAATGCCAATTATGCGTGGATAAGCCACTTTATCCACCATTTAGCTCCAAAAGGTCGG GCGGGATTTGTCCTTGCGAAAGGCTCTCTTACAAGCAACACAAGCACAGAGGGGCAAATCCGCAAAAACTTAATAGAATC TAACCTTATAGAATGTATTGTCAATCTCCCCGCAAAACTCTTTTTAAATACGCAGATTCCAGCGTGTCTGTGGTTTATCA AACGCAATAAACCCCATAACAACACGCTTTTTATTGACGCGCGAAGTCTAGGCGAACTCATCAATCGCAAAAATAGGATT CTAAATAAAGATGATATTGATAAAATCACAGAGACTTATCACAAATGGCAAAAGGCACAAGAGCAAAATGGGGATTACAG CGATATTCTAGGCTTTTGTAAAAGTGTAAGCAAAGAAGAGATGGCAAATCTAGGCTATGTCCTCACACCCGGTCGCTATG TGGGCTTGGCAGAAGATGATGAAGACTTTGACTTTGAAAGAGAATTTACACGCTTAAAAGCCGAGCTAGAATCTCAAATC AAAGAAGAGAGAATCTTAAGTGAAAAGATTCTAAACAATTTAGAGCTTATAGGTGGGAAATGA Protein sequence : MAKVKQTQKLEAALFSAADKLRKNIDAAEYKHIVLGLVFLKYISDSFESLHKELLSQNEDAEDKDEYIAKNIFFVPQDSR WSTLLSKAKSPQIGKDLDYALDLIEKDNPQLKGVLPKVYAKDNLDSATLGDLINLIDSISLNQENTSDILGHIFEYFLGE FALSEGKKGGQFYTPKSVVELLVAMLEPYNGRVFDPCCGSGGMFVQSERFVREHQGKISDISIYGQESNQTTWRLAKMNL ALRKIDSSSLKWNSEGSFLNDAHKDLKADFIIANPPFNATDWGSEALENDVRWQYGTPPSTNANYAWISHFIHHLAPKGR AGFVLAKGSLTSNTSTEGQIRKNLIESNLIECIVNLPAKLFLNTQIPACLWFIKRNKPHNNTLFIDARSLGELINRKNRI LNKDDIDKITETYHKWQKAQEQNGDYSDILGFCKSVSKEEMANLGYVLTPGRYVGLAEDDEDFDFEREFTRLKAELESQI KEERILSEKILNNLELIGGK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 1e-129 | 54 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 3e-129 | 54 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 1e-128 | 53 |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 2e-107 | 46 |
