Gene Information

Name : HCBAA847_1598 (HCBAA847_1598)
Accession : YP_007601459.1
Strain : Helicobacter cinaedi ATCC BAA-847
Genome accession: NC_020555
Putative virulence/resistance : Virulence
Product : VC_A0107 family type VI secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1536312 - 1536797 bp
Length : 486 bp
Strand : -
Note : similiar to HCN_1426 of H. cinaedi PAGU611

DNA sequence : 
ATGTCTGATGGTTCTAGTGCTCCAAAAGAGCGTATTAATATCACATACAAAGCAAAAACGAATGGACAAGAAGCAGATGT
TGAGTTACCCTTAAAATTGATGGTAATGACAAATTTGACAGGAGGAGCTGATAAATTACCTTTGGAAGAGCGAGAGATTT
TACAAATTAATAAGGTAAATTTTAGTCAGGTAATGCAGAAATTGGATATTAGTTCTAAATTTAGTGTTAAGAACACCTTG
GGCACAGGAGCAGAAGAGCTAAGTATTAATCTTAAAATTTCTAGTATGAAAGACTTTTCCCCAGATAGTATAGCAAAGCA
AATTCCCGAGCTTAATAAACTTATGCAACTAAGAGAGGCTTTAGTGGCTTTAAAAGGACCTATGGGTAATATTCCAGATT
TTAGAAAAGCAGTTTTAACCGCTTTAAAAGATAAAAAAACAAAAGAGAAATTGCTTTTAGAAATTAAAGAAGAAGTCAAA
GAATAG

Protein sequence : 
MSDGSSAPKERINITYKAKTNGQEADVELPLKLMVMTNLTGGADKLPLEEREILQINKVNFSQVMQKLDISSKFSVKNTL
GTGAEELSINLKISSMKDFSPDSIAKQIPELNKLMQLREALVALKGPMGNIPDFRKAVLTALKDKKTKEKLLLEIKEEVK
E

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 4e-44 70
aec17 YP_851427.1 hypothetical protein Not tested PAI II APEC-O1 Protein 5e-30 50
aec17 AAQ96711.1 Aec17 Not tested AGI-1 Protein 3e-30 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCBAA847_1598 YP_007601459.1 VC_A0107 family type VI secretion protein VFG2092 Protein 4e-31 51
HCBAA847_1598 YP_007601459.1 VC_A0107 family type VI secretion protein VFG2474 Protein 1e-27 46