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Name : HCBAA847_1595 (HCBAA847_1595) Accession : YP_007601456.1 Strain : Helicobacter cinaedi ATCC BAA-847 Genome accession: NC_020555 Putative virulence/resistance : Unknown Product : VC_A0110 family type VI secretion protein Function : - COG functional category : - COG ID : - EC number : - Position : 1532730 - 1534454 bp Length : 1725 bp Strand : - Note : similiar to HCN_1423 of H. cinaedi PAGU611 DNA sequence : GTGAATAATGAAGATGTATTTTACTACCAAAAAGAGCTTTCCTATCTCTATCAAACAAGAGAATATTTTGTCAAAAAATT TCCAAAACTCGCACCATTTTTAGCTCTTGATAGTAAAGACCCAGATATTGAGAGAATTATTGAAAATCTTGCTATTTTGA CTTCTAAAATTCATCAGGAAATGGAACAAAATATTCCATACATAGCAGAATCTTTGTTGAATGTAGTCTCTCCTAATTAT ACTAATCCACTACCTTCTTTGTGTATGCAAGAGTTTCTTTTAAATAAAGATAGTAAAAAAAATAAGATTATTGTTCCAAA AGGAAGTCGCCTTCAGTCTATAACCATAGAACAAATTGAGTGTGAGTTTAGAACGATTTATGATGTTTATCTCTACCCTT TAGATATTGATGAAGTGTTTATGAGCAGTGAAAAACAATATCACACAATGGATTTAAGGTTAAAGGTTAATAAGCCTGAT TTAAAAATTTGTGATATAGGATTAGATTGTTTAAATTTATATCTTGGAGATGACATCTACACTTCCGCAACTTTACTTTT ATTCATTCACCTTTATTTGGAGGAGGTAAAAATCATTTCTTGTGATACTTCTGAAAAGTTTAAGCTTAATTCTTGCAACA TTACAACAATAGGGCTTGAACCAAATGAAAGTTGTTTAAATTATGATGATTTAGGGTTTGAGGCTTTTTCTTTGCTTAGG GAGTATTTTTTTATCCCTGAAAAATTTAATTTTATAAGAATACAGGGTTTAGATATTTTAAAGGATTGTCAAGGCTCAAA TTTGAGTATTCAATTTAAGTTCAATAAAATTTTTCCAAAGAATTGCATCGTCAGAGCAGATTTATTTTCTTTAAGCATTA CGCCTATTGTGAATATTTTTCCCAAAAATGCAGAATCAATTATTAATGACCATACCAAAGATGGATATAGGATTTTTGTA GATAGGGTGCATTTAGATTCTTATGAAATTATAAAGATTAATCAAGTCAAAGCTCACAATAGTGATAGTGGAAGAAGGAT TCTTAAAAATTATAAGAGTTTTGAACGTTTTGAGTTTTTAAAAGACAATCAAAATGAATTTTATAGTATAAATGTTAAAA AAAATTCTAAAGGTGAAACATACAAAGAAATTTCTTTTTTTTCAGGGCATTCTTACAATGAGATAATTACCATTGATGCT TTGTGTTGTAATAAGAATTTACCCTCTAAGCTTAAGATAGGCGATATAAGACATATTAATTTTGAGGATATATCCACTAA AAATATTAAAATCCCAAGTATGATGAGAGAATATAGCGTTGATGGGCATTTACTTTGGAAGCTTGTATCTATACTCTCTT TTAATTATCAAAGTATTCTTAATACAACTTCATTTTTTGGAGTATTAGAAAGTTATAGTTTTGTCAATGACAAGGAGAAT GAAGAAACTTATAAGCGTTTAAAAAATTCTATTGCATATATAGAATCTAAATCGACTTACCTCGTTGATGAATACATTAC AAAAAAGGGAACACTCTGTATAATGGGCATTAAGGATTCTAATTTTTATTCTTTGGGAGAAGTTTATAAATTAGGGCTTA TAATATCTAAATTTTTTGCTTCTTTTGTAAGCATTAATTCTTTTTGCGAATTAAAGATAAAATGCTTGGATAGCAAAGAG ATTTTGTATTATCCAGCTACTCGCGGCAAAAAAGTTTCTTTATGA Protein sequence : MNNEDVFYYQKELSYLYQTREYFVKKFPKLAPFLALDSKDPDIERIIENLAILTSKIHQEMEQNIPYIAESLLNVVSPNY TNPLPSLCMQEFLLNKDSKKNKIIVPKGSRLQSITIEQIECEFRTIYDVYLYPLDIDEVFMSSEKQYHTMDLRLKVNKPD LKICDIGLDCLNLYLGDDIYTSATLLLFIHLYLEEVKIISCDTSEKFKLNSCNITTIGLEPNESCLNYDDLGFEAFSLLR EYFFIPEKFNFIRIQGLDILKDCQGSNLSIQFKFNKIFPKNCIVRADLFSLSITPIVNIFPKNAESIINDHTKDGYRIFV DRVHLDSYEIIKINQVKAHNSDSGRRILKNYKSFERFEFLKDNQNEFYSINVKKNSKGETYKEISFFSGHSYNEIITIDA LCCNKNLPSKLKIGDIRHINFEDISTKNIKIPSMMREYSVDGHLLWKLVSILSFNYQSILNTTSFFGVLESYSFVNDKEN EETYKRLKNSIAYIESKSTYLVDEYITKKGTLCIMGIKDSNFYSLGEVYKLGLIISKFFASFVSINSFCELKIKCLDSKE ILYYPATRGKKVSL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| HH0245 | NP_859776.1 | hypothetical protein | Not tested | HHGI1 | Protein | 2e-132 | 48 |
