Gene Information

Name : fliP (HCBAA847_0157)
Accession : YP_007600043.1
Strain : Helicobacter cinaedi ATCC BAA-847
Genome accession: NC_020555
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 168754 - 169578 bp
Length : 825 bp
Strand : +
Note : similiar to HCN_0157 of H. cinaedi PAGU611

DNA sequence : 
TTGAAAAAACTCATAGCTATGCTTTTGCTTTGTATTTACTCCCTTGCTTACGCAAATCCACAAAGCCCAGATTCTCCAAA
CACTAATCTCACTCCAGCACTTCCAGCCCCATCAAATATCGCTCCACTTCCTTCACTGCCTAAAAATCCAGTGTTGCCCT
CCGTGGATTTATCGCTGACTGCACCACAAGAGCCAACCGAGCTAGTTGCAACGCTTAATATCGTCCTTATCATCACACTG
CTTGTGATTGCCCCTTCACTTGTGCTTGTGATGACTAGCTTTACACGCATTGTCATTGTCTTTGCTTTTTTACGCACTGC
TTTAGGTACACAGCAGTCCCCACCAACACAGGTTTTAGTCAGCCTTGCACTTGTTTTGACATTTTTCATTATGGAGCCAG
TAGCGACTAAAAGCTATGAAGTTGGCATAAAGCCTTATACAGAAAAGCAGATTTCTTATGATGAGGCGTTTGAACGGGCA
ATTGTGCCTTTTAAGGATTTTATGATTAAAAACACGCGTGAAAAGGATTTAGCACTCTTTTTTAGAATCCGCAACCTTGA
AAATCCCCAAACCGTTGATGATGTGCCACTGACTGTGCTTATCCCGGCATTTATGATAAGTGAGCTTAAGACGGCATTTT
GGATTGGATTCTTATTGTATCTGCCCTTTTTAGTCATTGATATGGTGATAAGCTCCGTGCTTATGGCAATGGGTATGATG
ATGTTGCCGCCGGTTATGATTTCACTGCCTTTTAAGATTCTAGTCTTTGTGCTGGTTGATGGGTGGAATCTGCTTATTGG
GAATCTTGTGCAGGGCTTTAAGTAG

Protein sequence : 
MKKLIAMLLLCIYSLAYANPQSPDSPNTNLTPALPAPSNIAPLPSLPKNPVLPSVDLSLTAPQEPTELVATLNIVLIITL
LVIAPSLVLVMTSFTRIVIVFAFLRTALGTQQSPPTQVLVSLALVLTFFIMEPVATKSYEVGIKPYTEKQISYDEAFERA
IVPFKDFMIKNTREKDLALFFRIRNLENPQTVDDVPLTVLIPAFMISELKTAFWIGFLLYLPFLVIDMVISSVLMAMGMM
MLPPVMISLPFKILVFVLVDGWNLLIGNLVQGFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-27 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-27 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-27 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 8e-27 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 8e-27 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-26 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-30 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-30 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-30 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-30 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-30 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_007600043.1 flagellar biosynthesis protein VFG0519 Protein 8e-28 43