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Name : serS (HCBAA847_1337) Accession : YP_007601200.1 Strain : Helicobacter cinaedi ATCC BAA-847 Genome accession: NC_020555 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.11 Position : 1295273 - 1296550 bp Length : 1278 bp Strand : - Note : similiar to HCN_0652 of H. cinaedi PAGU611 DNA sequence : ATGATTGACACAAAGGCTTTGATAAATGATTTTGATAGGGTGAGTGAGCTACTTTGTATAAAAAAAGTGAGTGAAGATAC ACTCAAAGCACTAAAAGATCTTGCCATTGCGTATAAAAGCACAAAGCAGGAGCTTGAATCTCTCCAAGCCTTTCAAAATA AAGGCTCTCAAAAGCTTGGGCTATGGTTTAGAAGTGATGGGTGTCAAGATTTGATTGATGATTTAAAGTCACAACTTGAT GAAAATAAGAAAAAAATGAATAATGTAGAATCTAGGCTTAAGACTATTGAAGCAGAGCTTGAAAACCTTGCCTATACTAT TCCAAACTTGCCCGATTCTGCTACGCCAAAGGGCGAAGATGAGAGTGATAATATTGAGCTAAAAAAGGTACTAGAGCCTA GAATCTTTGACTTTACCCCAAAGGAGCATTGGGAGCTAGGTGTGGATAATGGCTGGATTGACTTTGAATCTGGGGTGAAG CTTGCTAAAAGTCGCTTTTCTGTCCTGCGTGGAATGGGGGCAAAACTCAATCGCGCGTTAATTAACTTTATGCTTGATTA TAATGAAAGGCAGGGCTTTGAATCCGTGGTAACGCCTGTGATTGCTAATGCTAGGACGCTTTTTGGCACCGGGCAGTTGC CGAAGTTTGAAAATGATATGTTTAAGGTGGATTCTCATTTTGATGAAGAGGGGAGCGAACACGATTTATACCTTATCTCT ACTTCGGAAATCACGCTTACAAATCTCTATCAAGACAGCATTATCCCAAGTGAGAACTTGCCTATAATGCTGACTTCTCA CACACCTTGTTTTCGCAAAGAGGCTGGTAGTGCGGGGCGAGATACACGCGGTATGATACGCCAACATCAATTTGACAAAG TGGAGCTTGTGGCGATTACTCATCCAAGCCAAAGTGAAGCTATGCAGGAAAAAATGCTAAAAACAGCAAGCGGGATTCTA AGTGAGCTAGGACTCCCGCACCGCTTTATGCGGCTTTGTGGGGGGGATTTGGGCTTTAGTGCGAGTAATACTATTGATAT TGAAGTGTGGCTACCCGGGCAGAACTGCTACCGCGAGATAAGCTCTATTTCAAATACGCGGGACTTTCAAGCACGAAGGG CAAAAATCCGCTATAAAGAAAATGGTAAAAACGCGTTAGTGCATACGCTCAATGGCTCATCATTAGCAGTAGGCAGGACA CTCATTGCCATTATGGAAAATTACCAAAGGGCTGATGGGAGCATAGAAATCCCAAAAGTGCTAGAAAAATATCTATAA Protein sequence : MIDTKALINDFDRVSELLCIKKVSEDTLKALKDLAIAYKSTKQELESLQAFQNKGSQKLGLWFRSDGCQDLIDDLKSQLD ENKKKMNNVESRLKTIEAELENLAYTIPNLPDSATPKGEDESDNIELKKVLEPRIFDFTPKEHWELGVDNGWIDFESGVK LAKSRFSVLRGMGAKLNRALINFMLDYNERQGFESVVTPVIANARTLFGTGQLPKFENDMFKVDSHFDEEGSEHDLYLIS TSEITLTNLYQDSIIPSENLPIMLTSHTPCFRKEAGSAGRDTRGMIRQHQFDKVELVAITHPSQSEAMQEKMLKTASGIL SELGLPHRFMRLCGGDLGFSASNTIDIEVWLPGQNCYREISSISNTRDFQARRAKIRYKENGKNALVHTLNGSSLAVGRT LIAIMENYQRADGSIEIPKVLEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 1e-82 | 45 |
