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Name : tktA (HCBAA847_1167) Accession : YP_007601035.1 Strain : Helicobacter cinaedi ATCC BAA-847 Genome accession: NC_020555 Putative virulence/resistance : Unknown Product : transketolase Function : - COG functional category : - COG ID : - EC number : 2.2.1.1 Position : 1140622 - 1142577 bp Length : 1956 bp Strand : - Note : similiar to HCN_0812 of H. cinaedi PAGU611 DNA sequence : ATGCAAAGACAAGTTGTCATCACACAAGAAGATGTCCCATTGCTGCAAAAGATGTCCCACACGCTAGGTTTTTTATGTGC GGATATGGTGCAAAAGGCAAATAGTGGGCATCCGGGCGCACCTATGGGACTAGCTGATATAGCAAGTGTGCTTAGCTTCC ATCTTAATCTTTCGCCTAAAAATCCCGCGTGGCTTAATCGCGATAGGCTTATTTTTAGTGGCGGACACGCAAGTACATTA GTATATTCGTTGCTGCATTTATGGGGCTTTGATGTGAGTATGCAGGATTTACAATCTTTCCGTCAGTTTGGGTCAAAAAC GCCCGGACACCCAGAGTTTAAGCACACGCAAGGTGTAGAGATAACCACAGGTCCATTAGGGCAGGGCATAGCAAACGCTG TGGGTAAGGCAATGGCGAGTAAATATGCGACTAATCTTTTTGGACGCGAGATTTTCTCACATTTTGTGTATTGTTTATGC GGTGATGGGGATTTGCAGGAGGGTATTAGCTATGAATCTGCTTCACTAGCCGGACATCATAAGCTTTCAAATCTCATTGT GATTTATGATAGTAACAATATTACGATTGAAGGAGACACGCATATTGCGATGAGTGAGAATATAAGAGGGCGGTTTGAAG CACAGGGCTGGGAAGTGTTAGAGTGCGATGGGCATAATTTTTTGCAGATTCATAACACTTTAGAATCTGCAAAAAGCTCT TCAAAACCAAGCTTAATTATCGCTAAAACGATTATTGCCAAAAATGCTCTAAGTTTAGAGGGTAGCCATAAAGCTCACGG TGCACCTTTGGGCGAAGAGATCATAGCAAAAGCAAAGCAAAAGCTAGGATTCCCTTTAGAATCTTTTCATATTCCTTGCG ATGTGGCTTTTGCTTTTGGAATGATGAAAGAGCGTGGGGAGCTTTTAGAATTACAATGGCAAAAGCAGGTGGATAATCTC CCGCAAATTGCTAGAGAGCGATTTGAAGCTATGGTAAAAATGGATATATCAAATATTTCTTATCCGCAATTTGAAGTGGG GCAGAGTGTGGCTACTCGCGTGAGTAATGGCAAGATTCTTAATGCTATTTCTGCTGGGGTGGAGGGCTTTATTGGGGGGA GTGCTGATTTAGCCCCATCAAATAACACAACGCTTGAAAATGAAGGCGATTTTCCACAGGGTAAAAATTGGCATTTTGGT ATTAGAGAACACGCTATGGGGGCGATTTGCAATGGTGTAGCAAACTATGGCTTATTTTTGCCATTTTGTGCTACTTTTTT TGTATTTAGCGACTATATGAGCCCAAGTGTGCGTGTGGCAAGCCTTATGAAAGCAAGGGTGTATTACATTTGGACACACG ATTCTATCGGTGTGGGCGAAGATGGAGCGACACATCAACCCATAGAGCAGTTAAGTCATTTTAGAGCAATGCCAAATCTG CTTGTATTCCGCCCAGCTGACGCGAATGAAAATGTGGCGTGTTGGCAAGTGGCATTAGATTCTAATCTGCCTTGTGCCTT TGTGCTAAGTCGGCAGAATCTCCCTGTGCTTATGCCTTATAATGCGGATTTGAAAGAAAAAGTGAAAAAGGGGGCATATA TTTTACAAGAGTGTGAAAATGCGGATATTACGCTTATGGCAAGTGGGAGTGAAGTGAGTTTGGCCATCAATGCAGGTAAA GCGTTAGAACAAGCAGGAATCAAAGCAAGGGTAGTGAGTGTGCCTTGCTTTGATTTATTGCTAGAGCAGTCAAAAAGCTA TGTGAAAGAGCTATGTGGGGAGAGTAAGATTCTAGCCATTGAAGCTTCAAGGGGGCTAGAGTGGTATTATGTAGCAGATG AAGTGATAAGTATGAAAGGCTTTGGGGCTTCAGGCAAGGGGGAAATGCTTTTGAATCATTTTGGATTCAGTGTAGAAAAT ATTCTTAAAGTTGCTGAAACGCTGTGTAAAAAATAA Protein sequence : MQRQVVITQEDVPLLQKMSHTLGFLCADMVQKANSGHPGAPMGLADIASVLSFHLNLSPKNPAWLNRDRLIFSGGHASTL VYSLLHLWGFDVSMQDLQSFRQFGSKTPGHPEFKHTQGVEITTGPLGQGIANAVGKAMASKYATNLFGREIFSHFVYCLC GDGDLQEGISYESASLAGHHKLSNLIVIYDSNNITIEGDTHIAMSENIRGRFEAQGWEVLECDGHNFLQIHNTLESAKSS SKPSLIIAKTIIAKNALSLEGSHKAHGAPLGEEIIAKAKQKLGFPLESFHIPCDVAFAFGMMKERGELLELQWQKQVDNL PQIARERFEAMVKMDISNISYPQFEVGQSVATRVSNGKILNAISAGVEGFIGGSADLAPSNNTTLENEGDFPQGKNWHFG IREHAMGAICNGVANYGLFLPFCATFFVFSDYMSPSVRVASLMKARVYYIWTHDSIGVGEDGATHQPIEQLSHFRAMPNL LVFRPADANENVACWQVALDSNLPCAFVLSRQNLPVLMPYNADLKEKVKKGAYILQECENADITLMASGSEVSLAINAGK ALEQAGIKARVVSVPCFDLLLEQSKSYVKELCGESKILAIEASRGLEWYYVADEVISMKGFGASGKGEMLLNHFGFSVEN ILKVAETLCKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tktA | AAO17218.1 | TktA | Not tested | tcd island | Protein | 5e-103 | 42 |
| APECO1_2641 | YP_859417.1 | transketolase | Not tested | Not named | Protein | 6e-99 | 42 |
