Gene Information

Name : HCBAA847_1126 (HCBAA847_1126)
Accession : YP_007600994.1
Strain : Helicobacter cinaedi ATCC BAA-847
Genome accession: NC_020555
Putative virulence/resistance : Virulence
Product : UDP-glucose/GDP-mannose dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : 1.1.1.-
Position : 1098687 - 1099943 bp
Length : 1257 bp
Strand : +
Note : similiar to HCN_0854 of H. cinaedi PAGU611

DNA sequence : 
ATGCCTATTCCCACGCTTCAAAATGCACATATCGCTATCATCGGATTAGGCTATGTTGGTTTGCCCTTGTCTGTGGCTTT
TAGCAAAATCTATCCCACCATTGGCTTTGATATAAATCCACAGCGGATTGATGAGCTAAAATCTAGCTTTGATAGCACAC
AGCAAGTAAGCAAACAAGAGCTGCAAAACTCCCCAAATCTTAGCTTCACGCATAATCTCTCACACATCGCACACGCAAAT
ATTTATATTATCTGTGTGCCTACACCCATCACAGAAAATAAAACACCAGATCTCTCCGCCCTAATTCACGCAAGTGAGCT
TGTAGGTAAGATTTTACAAAAAGGTAATATCGTGATTTATGAATCTACCACTTACCCCACCTGCACGGAAAATGAATGCA
AAAACGCCTTAGAAAAAAGCTCAAATCTCACTTTCAACACTGACTTTCACCTTGGCTACTCGCCTGAACGCATTAACCCA
AGCGATAGCTCCCACACACTCACACAGATTCAAAAAATCACTTCCGGTAGCACAAAGCAAGTAGCACACTTCATTGATAG
CCTATATAGCTCAATCATCACAGCCGGGACTTTTTGCGTCTCATCAATCAAAACTGCTGAAATGACAAAAATCATAGAAA
ACGCTCAACGCGATTTAAACATCGCCTTTATCAATGAAATGTATATGATTTGCGATGCCTTGCAGATTGACGCCCTAGAA
GTGCTTGAAGCGGCAAAGACAAAGTGGAACTTCCTGCCTTTCACACCCGGGCTTGTTGGGGGGCATTGCATAAGTGTAGA
TCCTTATTATCTCACGCATAAGCTTCATAGTATCGGCTATCACCCGCAAGTGATTAGCTCTGGGCGGCTCATTAATGATA
CTATGCCACATTTTATCGCACAGAAAATCATCAAGCTACTTATTCAAAATGGCATTGAGATTCTAAACGCAAAAGTTTTA
ATCCTTGGCATTACCTTTAAGCAAAACTGCCCTGATATACGAAACTCCAAAGTCCCCATTGTGAAAAAGGAGCTAGAATC
TTTTGGGCTAAAAGTAGATGTGTATGACCCTGTGGCAAATAAGCAAGAAGTGCAAAAAGAGTATCAAATCTCACTTTTAG
ATGAGTTGCCCTTAGCCTATTTTGACTGCATTTTTCTAGCCGTAGCTCATAATAAGCTCCTCTGCCTTAATCACAAAAAG
CTAGGCAAAGCAAAATCTATCTATTACACGCTCACAGCCCATAAGCTAGATTCATAA

Protein sequence : 
MPIPTLQNAHIAIIGLGYVGLPLSVAFSKIYPTIGFDINPQRIDELKSSFDSTQQVSKQELQNSPNLSFTHNLSHIAHAN
IYIICVPTPITENKTPDLSALIHASELVGKILQKGNIVIYESTTYPTCTENECKNALEKSSNLTFNTDFHLGYSPERINP
SDSSHTLTQIQKITSGSTKQVAHFIDSLYSSIITAGTFCVSSIKTAEMTKIIENAQRDLNIAFINEMYMICDALQIDALE
VLEAAKTKWNFLPFTPGLVGGHCISVDPYYLTHKLHSIGYHPQVISSGRLINDTMPHFIAQKIIKLLIQNGIEILNAKVL
ILGITFKQNCPDIRNSKVPIVKKELESFGLKVDVYDPVANKQEVQKEYQISLLDELPLAYFDCIFLAVAHNKLLCLNHKK
LGKAKSIYYTLTAHKLDS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 6e-100 54
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 6e-100 54
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-90 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCBAA847_1126 YP_007600994.1 UDP-glucose/GDP-mannose dehydrogenase VFG0431 Protein 3e-100 54