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Name : lysS (HCBAA847_1120) Accession : YP_007600988.1 Strain : Helicobacter cinaedi ATCC BAA-847 Genome accession: NC_020555 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 1092770 - 1094350 bp Length : 1581 bp Strand : + Note : similiar to HCN_0860 of H. cinaedi PAGU611 DNA sequence : ATGTTTTCTAATTTTTACATACAGCAACGCATTAAAAAAATGCAACTTATGCGTGAGGAGGGCTTGAATCCTTATGCGAA TGACACAAAACGCACCATAAGCAATAATGACTTTTTACAAAAATATGCTTTTCTAAAATCCCAAGAGCAAGGGGCAGAGA GTGCAGATTCTAGCTCAACAAAATCTCAACCCATAGAATCTATTGTGGGGCGAGTGCGATTTATCCGTCTTATGGGCAAG GCGTGTTTTGTGAAGATTCAAGATGAAAGCGGGGTGCTTCAAGCTTATATCTCAAAGAACGATGTGGGCGAAGATTTTGC GTATATCAAAAAGATATTAGAAGTGGGGGATATAATCAATGTATCAGGTTATGCGTTTGTAACTAAAACCGGGGAGCTAA GTATCCACACGCTAAGCTTTAAGATTCTAAGCAAAAGTATCGTGCCACTGCCGGAGAAATTCCACGGGCTAAGCGATATA GAGTTGCGTTACCGCCAACGCTATGTGGATTTGATTGTAAATGAGAATGTCAAAGAAACCTTTAAATTACGCAGTAAAAT CATCTCGTGTGTGCGGCAGTTTTTTGAAAAAAAAGGATTTTTAGAAGTAGAAACGCCTATGCTTCACCCAATCCCCGGCG GTGCAAATGCGCGTCCTTTTATCACACATCATAATGCCCTTGATGTGGAGCGGTATTTACGCATTGCCCCAGAGTTATAT CTTAAAAGGCTTATTGTAGGCGGATTTGAAGCCATTTTTGAGCTGAATCGTAATTTTCGCAACGAGGGAATGGACCACTC GCATAATCCCGAATTTAGTATGATTGAATTTTACTGGGCGTATAAGACTTATGAAGATCTCATCACACTCACCCAAGAGC TTTTTACATATCTTTTAGAAGAGCTTAAACTCCCTAAGATTCTAAAGCACAACGACACAGAGATTGACTTTAGCAAATGG CAGATTCTAAGCTACAAAGAAGCCTTAGAATCCATAGGCGGATTAGATAAACATATCATTGAAAACAAGGAATTATTGCT TCAAACACTCCAAGAGAGACATCTCAAGATTGATAGTTCTTTCAGCTATGGAAAGCTTTTAGGAGAGGCATTTGATGAGT TTGTAGAATCTAAACTTATCAATCCCACTTTTATCACGCAATATCCCATTGACATTAGCCCACTTGCAAGACGCAATGAT GAGAATCTAGAGATTGCCGATAGGTTTGAGCTTTTTATCGGTGGTAAGGAAATAGCCAATGGATTTAGTGAGCTAAATGA TCCACTTGACCAGCTTGAGCGTTTTAAAGAACAAGTCAAGGCAAAGGACGCAGGAGATGAAGAGGCTCAATATATGGACG AAGATTATGTATGGGCTTTAGCACACGGAATGCCCCCAACTGCGGGTGAAGGCATAGGGATTGATAGGCTAGTTATGCTT TTAAGCGATGCAAAAAGCATTAAAGATGTGATTTTATTCCCTGCTTTAAAGCCAAGTAAAACAAATTTTGATATAATGCC AAGCGATGATACTGCTCAAGCCAATCAAGGAAGCCCAAATCACGCAAATAAGGAGAAATGA Protein sequence : MFSNFYIQQRIKKMQLMREEGLNPYANDTKRTISNNDFLQKYAFLKSQEQGAESADSSSTKSQPIESIVGRVRFIRLMGK ACFVKIQDESGVLQAYISKNDVGEDFAYIKKILEVGDIINVSGYAFVTKTGELSIHTLSFKILSKSIVPLPEKFHGLSDI ELRYRQRYVDLIVNENVKETFKLRSKIISCVRQFFEKKGFLEVETPMLHPIPGGANARPFITHHNALDVERYLRIAPELY LKRLIVGGFEAIFELNRNFRNEGMDHSHNPEFSMIEFYWAYKTYEDLITLTQELFTYLLEELKLPKILKHNDTEIDFSKW QILSYKEALESIGGLDKHIIENKELLLQTLQERHLKIDSSFSYGKLLGEAFDEFVESKLINPTFITQYPIDISPLARRND ENLEIADRFELFIGGKEIANGFSELNDPLDQLERFKEQVKAKDAGDEEAQYMDEDYVWALAHGMPPTAGEGIGIDRLVML LSDAKSIKDVILFPALKPSKTNFDIMPSDDTAQANQGSPNHANKEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-107 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_007600988.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-107 | 49 |
