Gene Information

Name : HCBAA847_1009 (HCBAA847_1009)
Accession : YP_007600878.1
Strain : Helicobacter cinaedi ATCC BAA-847
Genome accession: NC_020555
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 974794 - 975573 bp
Length : 780 bp
Strand : +
Note : similiar to HCN_0963 of H. cinaedi PAGU611

DNA sequence : 
ATGGAATCTCGTAATTTTATTGTCCTAAAAAATATTCATAAGACTTATGGCAAGGGAGAGAGTGCGTTTGAAGCATTAAA
GGGCGTGAGTTTGCAGATAGATAAGGGGGAGTTTGTCGCCCTTATGGGTCCTAGTGGATCGGGTAAATCAAGCCTTGCCA
ATATTCTAGGCACACTTGATGTGGGGAGTAGTGGAGAATATCACTTTGGGGATATAGATGTGTTTAGCTTATCTCACAAT
GAACGCGCCTTGCTCCGCCGCAATTATATAGGCTTTATTTTTCAAGGATTTAATCTCCTGCCCCGCACAACGGCACTTGA
AAATGTGGAGCTACCCTTGATGTATCGTGGGGTGAAAAAGGCAGTGCGTGAAGAGATAGCCTTGAAAGCGCTTGATAAAG
TAGGGCTTAGAGAATGGGCAGAGCATACAAGTGCCAAGCTAAGTGGCGGACAGCAGCAAAGAGTGGCTATCGCTAGGGCG
ATCGCACAGGAACCACTTTTTTTACTTGCCGATGAACCAACGGGGAATCTTGATACCAAAAGAAGTGTGGAGATAATGGA
GATTCTAAAGAGCTTAAATCAAAGTTTAGGTATTACGATTCTTATGGTAACGCACGAGCCGGATATGGCGAGATATGCCA
AGAGAGAATTGCATTTTTTAGATGGTAAGTTGGTGGCTGATTCACAAAGCGATACTTTAAACGCTCAAAAGGCTGAATCT
TTAAGGGCGGATTCTATAACTACTGATACTGTAGAGATGGATTCTAAGGGGGATTTATGA

Protein sequence : 
MESRNFIVLKNIHKTYGKGESAFEALKGVSLQIDKGEFVALMGPSGSGKSSLANILGTLDVGSSGEYHFGDIDVFSLSHN
ERALLRRNYIGFIFQGFNLLPRTTALENVELPLMYRGVKKAVREEIALKALDKVGLREWAEHTSAKLSGGQQQRVAIARA
IAQEPLFLLADEPTGNLDTKRSVEIMEILKSLNQSLGITILMVTHEPDMARYAKRELHFLDGKLVADSQSDTLNAQKAES
LRADSITTDTVEMDSKGDL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 4e-27 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-22 41
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 4e-20 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCBAA847_1009 YP_007600878.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-44 51
HCBAA847_1009 YP_007600878.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 5e-38 51
HCBAA847_1009 YP_007600878.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 6e-31 45
HCBAA847_1009 YP_007600878.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 1e-28 43